Strain Fitness in Pseudomonas putida KT2440 around PP_4722

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4719 and PP_4720 are separated by 102 nucleotidesPP_4720 and PP_4721 are separated by 12 nucleotidesPP_4721 and PP_4722 overlap by 44 nucleotidesPP_4722 and PP_4723 overlap by 4 nucleotides PP_4719: PP_4719 - Ribosomal RNA large subunit methyltransferase E, at 5,366,753 to 5,367,376 _4719 PP_4720: PP_4720 - putative RNA binding protein, at 5,367,479 to 5,367,787 _4720 PP_4721: PP_4721 - conserved membrane protein of unknown function, at 5,367,800 to 5,368,270 _4721 PP_4722: PP_4722 - Transcription elongation factor GreA, at 5,368,227 to 5,368,709 _4722 PP_4723: PP_4723 - Carbamoyl-phosphate synthase large chain, at 5,368,706 to 5,371,936 _4723 Position (kb) 5368 5369Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5367.392 kb on + strandat 5367.392 kb on + strandat 5367.393 kb on - strandat 5367.393 kb on - strandat 5367.479 kb on - strandat 5367.510 kb on - strand, within PP_4720at 5367.510 kb on - strand, within PP_4720at 5367.510 kb on - strand, within PP_4720at 5367.779 kb on + strandat 5367.779 kb on + strandat 5367.780 kb on - strandat 5367.780 kb on - strandat 5367.780 kb on - strandat 5367.791 kb on + strandat 5367.791 kb on + strandat 5367.791 kb on + strandat 5367.792 kb on - strandat 5367.792 kb on - strandat 5367.792 kb on - strandat 5367.927 kb on + strand, within PP_4721at 5367.927 kb on + strand, within PP_4721at 5367.927 kb on + strand, within PP_4721at 5367.927 kb on + strand, within PP_4721at 5367.927 kb on + strand, within PP_4721at 5367.927 kb on + strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.928 kb on - strand, within PP_4721at 5367.931 kb on - strand, within PP_4721at 5368.272 kb on - strandat 5368.292 kb on + strand, within PP_4722at 5368.292 kb on + strand, within PP_4722at 5368.292 kb on + strand, within PP_4722at 5368.293 kb on - strand, within PP_4722at 5368.293 kb on - strand, within PP_4722at 5368.293 kb on - strand, within PP_4722at 5368.293 kb on - strand, within PP_4722at 5368.390 kb on + strand, within PP_4722at 5368.390 kb on + strand, within PP_4722at 5368.391 kb on - strand, within PP_4722at 5368.391 kb on - strand, within PP_4722at 5368.391 kb on - strand, within PP_4722at 5368.426 kb on - strand, within PP_4722at 5368.561 kb on + strand, within PP_4722at 5368.561 kb on + strand, within PP_4722at 5368.700 kb on + strandat 5368.851 kb on + strandat 5369.194 kb on - strand, within PP_4723at 5369.268 kb on + strand, within PP_4723at 5369.269 kb on - strand, within PP_4723at 5369.269 kb on - strand, within PP_4723at 5369.269 kb on - strand, within PP_4723at 5369.318 kb on - strand, within PP_4723at 5369.418 kb on + strand, within PP_4723at 5369.419 kb on - strand, within PP_4723at 5369.419 kb on - strand, within PP_4723at 5369.465 kb on + strand, within PP_4723at 5369.466 kb on - strand, within PP_4723at 5369.466 kb on - strand, within PP_4723at 5369.535 kb on + strand, within PP_4723at 5369.535 kb on + strand, within PP_4723at 5369.570 kb on + strand, within PP_4723at 5369.571 kb on - strand, within PP_4723at 5369.571 kb on - strand, within PP_4723at 5369.705 kb on + strand, within PP_4723at 5369.705 kb on + strand, within PP_4723at 5369.706 kb on - strand, within PP_4723

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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5,367,392 + -0.7
5,367,392 + +1.4
5,367,393 - +0.6
5,367,393 - +0.3
5,367,479 - +1.5
5,367,510 - PP_4720 0.10 -1.8
5,367,510 - PP_4720 0.10 +0.7
5,367,510 - PP_4720 0.10 -0.6
5,367,779 + +1.3
5,367,779 + +1.1
5,367,780 - -1.5
5,367,780 - -0.2
5,367,780 - +0.5
5,367,791 + -0.3
5,367,791 + -1.9
5,367,791 + -1.2
5,367,792 - +1.7
5,367,792 - -1.5
5,367,792 - +4.3
5,367,927 + PP_4721 0.27 +0.1
5,367,927 + PP_4721 0.27 -0.6
5,367,927 + PP_4721 0.27 +0.4
5,367,927 + PP_4721 0.27 -0.9
5,367,927 + PP_4721 0.27 -0.4
5,367,927 + PP_4721 0.27 -0.6
5,367,928 - PP_4721 0.27 +1.1
5,367,928 - PP_4721 0.27 -0.9
5,367,928 - PP_4721 0.27 -1.1
5,367,928 - PP_4721 0.27 +0.1
5,367,928 - PP_4721 0.27 -0.5
5,367,928 - PP_4721 0.27 +0.9
5,367,928 - PP_4721 0.27 +1.0
5,367,928 - PP_4721 0.27 +0.1
5,367,931 - PP_4721 0.28 +0.3
5,368,272 - +0.4
5,368,292 + PP_4722 0.13 -1.4
5,368,292 + PP_4722 0.13 -0.4
5,368,292 + PP_4722 0.13 -1.4
5,368,293 - PP_4722 0.14 -1.5
5,368,293 - PP_4722 0.14 +2.0
5,368,293 - PP_4722 0.14 -1.6
5,368,293 - PP_4722 0.14 -1.0
5,368,390 + PP_4722 0.34 +0.9
5,368,390 + PP_4722 0.34 -0.1
5,368,391 - PP_4722 0.34 -1.1
5,368,391 - PP_4722 0.34 -1.0
5,368,391 - PP_4722 0.34 -0.7
5,368,426 - PP_4722 0.41 -0.3
5,368,561 + PP_4722 0.69 -1.4
5,368,561 + PP_4722 0.69 +0.9
5,368,700 + +0.1
5,368,851 + +2.4
5,369,194 - PP_4723 0.15 +2.4
5,369,268 + PP_4723 0.17 +1.4
5,369,269 - PP_4723 0.17 +0.9
5,369,269 - PP_4723 0.17 +2.4
5,369,269 - PP_4723 0.17 +2.4
5,369,318 - PP_4723 0.19 +2.4
5,369,418 + PP_4723 0.22 +2.4
5,369,419 - PP_4723 0.22 +2.4
5,369,419 - PP_4723 0.22 +1.4
5,369,465 + PP_4723 0.23 +2.4
5,369,466 - PP_4723 0.24 +2.4
5,369,466 - PP_4723 0.24 +2.4
5,369,535 + PP_4723 0.26 +2.4
5,369,535 + PP_4723 0.26 +1.4
5,369,570 + PP_4723 0.27 +0.4
5,369,571 - PP_4723 0.27 +2.4
5,369,571 - PP_4723 0.27 +2.4
5,369,705 + PP_4723 0.31 +0.9
5,369,705 + PP_4723 0.31 +2.4
5,369,706 - PP_4723 0.31 +0.1

Or see this region's nucleotide sequence