Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4641 and PP_4642 are separated by 153 nucleotides PP_4642 and PP_4643 are separated by 263 nucleotides PP_4643 and PP_4644 are separated by 35 nucleotides
PP_4641: PP_4641 - putative transporter, at 5,264,545 to 5,266,611
_4641
PP_4642: PP_4642 - Cyclic diguanosine monophosphate-binding protein, at 5,266,765 to 5,267,151
_4642
PP_4643: PP_4643 - Xanthine/uracil permease family protein, at 5,267,415 to 5,268,932
_4643
PP_4644: PP_4644 - DNA repair enzyme, at 5,268,968 to 5,270,338
_4644
Position (kb) 5267
5268
5269 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5266.448 kb on + strand at 5266.448 kb on + strand at 5266.448 kb on + strand at 5266.449 kb on - strand at 5266.449 kb on - strand at 5266.449 kb on - strand at 5266.451 kb on + strand at 5266.451 kb on + strand at 5266.452 kb on - strand at 5266.452 kb on - strand at 5266.452 kb on - strand at 5266.470 kb on - strand at 5266.470 kb on - strand at 5266.470 kb on - strand at 5266.470 kb on - strand at 5266.556 kb on - strand at 5266.556 kb on - strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.596 kb on + strand at 5266.597 kb on - strand at 5266.597 kb on - strand at 5266.599 kb on + strand at 5266.599 kb on + strand at 5266.599 kb on + strand at 5266.599 kb on + strand at 5266.599 kb on + strand at 5266.599 kb on + strand at 5266.600 kb on - strand at 5266.600 kb on - strand at 5266.615 kb on + strand at 5266.695 kb on + strand at 5266.721 kb on - strand at 5266.742 kb on - strand at 5266.742 kb on - strand at 5266.742 kb on - strand at 5266.742 kb on - strand at 5266.745 kb on + strand at 5266.745 kb on + strand at 5266.745 kb on + strand at 5266.745 kb on + strand at 5266.745 kb on + strand at 5266.746 kb on - strand at 5266.748 kb on - strand at 5266.772 kb on - strand at 5267.051 kb on - strand, within PP_4642 at 5267.162 kb on + strand at 5267.162 kb on + strand at 5267.163 kb on - strand at 5267.167 kb on - strand at 5267.167 kb on - strand at 5267.170 kb on + strand at 5267.170 kb on + strand at 5267.170 kb on + strand at 5267.170 kb on + strand at 5267.171 kb on - strand at 5267.171 kb on - strand at 5267.174 kb on - strand at 5267.174 kb on - strand at 5267.214 kb on + strand at 5267.214 kb on + strand at 5267.214 kb on + strand at 5267.214 kb on + strand at 5267.214 kb on + strand at 5267.215 kb on - strand at 5267.215 kb on - strand at 5267.238 kb on - strand at 5267.249 kb on + strand at 5267.272 kb on + strand at 5267.273 kb on - strand at 5267.341 kb on - strand at 5267.366 kb on + strand at 5267.396 kb on + strand at 5267.420 kb on + strand at 5267.420 kb on + strand at 5267.420 kb on + strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.421 kb on - strand at 5267.490 kb on + strand at 5267.490 kb on + strand at 5267.490 kb on + strand at 5267.491 kb on - strand at 5267.491 kb on - strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.517 kb on + strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.518 kb on - strand at 5267.536 kb on + strand at 5267.916 kb on - strand, within PP_4643 at 5268.082 kb on - strand, within PP_4643 at 5268.180 kb on - strand, within PP_4643 at 5268.180 kb on - strand, within PP_4643 at 5268.390 kb on + strand, within PP_4643 at 5268.390 kb on + strand, within PP_4643 at 5268.391 kb on - strand, within PP_4643 at 5268.424 kb on + strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.425 kb on - strand, within PP_4643 at 5268.494 kb on + strand, within PP_4643 at 5268.552 kb on + strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.553 kb on - strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.630 kb on + strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.631 kb on - strand, within PP_4643 at 5268.790 kb on - strand at 5268.823 kb on - strand at 5269.130 kb on + strand, within PP_4644 at 5269.478 kb on - strand, within PP_4644 at 5269.508 kb on + strand, within PP_4644 at 5269.509 kb on - strand, within PP_4644 at 5269.623 kb on + strand, within PP_4644 at 5269.624 kb on - strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,266,448 + -0.0 5,266,448 + +0.0 5,266,448 + -0.9 5,266,449 - -0.4 5,266,449 - -0.0 5,266,449 - -0.5 5,266,451 + -0.2 5,266,451 + +0.9 5,266,452 - -0.1 5,266,452 - +2.7 5,266,452 - +0.5 5,266,470 - +0.5 5,266,470 - -0.5 5,266,470 - -0.3 5,266,470 - -0.6 5,266,556 - +3.6 5,266,556 - -0.2 5,266,596 + +2.0 5,266,596 + +0.7 5,266,596 + +1.5 5,266,597 - +0.5 5,266,597 - +0.6 5,266,599 + +1.1 5,266,599 + +0.3 5,266,599 + +2.7 5,266,599 + +0.4 5,266,599 + -0.3 5,266,599 + +1.3 5,266,600 - +2.0 5,266,600 - -0.6 5,266,615 + +0.2 5,266,695 + +0.9 5,266,721 - +0.3 5,266,742 - +0.2 5,266,742 - -2.1 5,266,742 - -2.1 5,266,742 - +2.4 5,266,745 + +0.0 5,266,745 + +0.7 5,266,745 + -0.6 5,266,745 + -0.9 5,266,745 + +2.1 5,266,746 - -1.1 5,266,748 - -0.2 5,266,772 - -0.1 5,267,051 - PP_4642 0.74 +1.2 5,267,162 + +1.3 5,267,162 + +1.4 5,267,163 - +1.7 5,267,167 - -1.6 5,267,167 - +1.6 5,267,170 + +1.2 5,267,170 + -1.3 5,267,170 + -1.7 5,267,170 + -1.2 5,267,171 - -0.9 5,267,171 - -0.4 5,267,174 - +0.8 5,267,174 - -0.0 5,267,214 + -0.8 5,267,214 + +0.1 5,267,214 + -1.4 5,267,214 + +0.9 5,267,214 + -0.6 5,267,215 - -1.0 5,267,215 - -1.0 5,267,238 - +0.6 5,267,249 + +1.9 5,267,272 + -0.7 5,267,273 - +0.3 5,267,341 - +0.1 5,267,366 + -0.7 5,267,396 + +0.0 5,267,420 + -0.5 5,267,420 + -0.6 5,267,420 + -1.6 5,267,421 - -0.8 5,267,421 - -0.3 5,267,421 - -0.6 5,267,421 - -0.0 5,267,421 - +1.0 5,267,421 - +0.9 5,267,421 - +2.1 5,267,421 - +0.9 5,267,490 + -0.1 5,267,490 + -0.1 5,267,490 + -2.6 5,267,491 - +0.9 5,267,491 - +1.0 5,267,517 + +0.2 5,267,517 + -0.2 5,267,517 + +1.4 5,267,517 + +1.3 5,267,517 + +0.3 5,267,517 + +0.0 5,267,517 + -0.3 5,267,517 + -2.2 5,267,517 + -0.3 5,267,517 + +0.2 5,267,518 - -0.1 5,267,518 - +1.2 5,267,518 - +0.9 5,267,518 - +2.4 5,267,518 - +1.0 5,267,518 - -0.4 5,267,518 - -0.2 5,267,536 + -1.1 5,267,916 - PP_4643 0.33 -0.3 5,268,082 - PP_4643 0.44 +0.4 5,268,180 - PP_4643 0.50 -0.6 5,268,180 - PP_4643 0.50 +0.1 5,268,390 + PP_4643 0.64 -2.1 5,268,390 + PP_4643 0.64 +1.7 5,268,391 - PP_4643 0.64 +0.3 5,268,424 + PP_4643 0.66 +0.7 5,268,425 - PP_4643 0.67 +8.5 5,268,425 - PP_4643 0.67 +1.3 5,268,425 - PP_4643 0.67 +0.3 5,268,494 + PP_4643 0.71 +0.0 5,268,552 + PP_4643 0.75 +0.8 5,268,553 - PP_4643 0.75 +1.5 5,268,553 - PP_4643 0.75 -1.0 5,268,553 - PP_4643 0.75 -0.3 5,268,630 + PP_4643 0.80 +0.7 5,268,630 + PP_4643 0.80 +0.9 5,268,630 + PP_4643 0.80 -0.7 5,268,630 + PP_4643 0.80 -1.4 5,268,630 + PP_4643 0.80 +0.6 5,268,631 - PP_4643 0.80 +1.2 5,268,631 - PP_4643 0.80 +0.2 5,268,631 - PP_4643 0.80 +1.0 5,268,631 - PP_4643 0.80 -0.9 5,268,790 - +1.4 5,268,823 - +0.4 5,269,130 + PP_4644 0.12 +2.6 5,269,478 - PP_4644 0.37 -0.1 5,269,508 + PP_4644 0.39 -0.1 5,269,509 - PP_4644 0.39 -0.5 5,269,623 + PP_4644 0.48 -1.2 5,269,624 - PP_4644 0.48 +1.7 5,269,728 + PP_4644 0.55 -1.3 5,269,728 + PP_4644 0.55 +0.7 5,269,728 + PP_4644 0.55 +0.1 5,269,728 + PP_4644 0.55 +0.3
Or see this region's nucleotide sequence