Strain Fitness in Pseudomonas putida KT2440 around PP_2488

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
2,834,713	+		PP_2487	0.53	+0.6
2,834,713	+		PP_2487	0.53	+1.2
2,834,714	-				+2.4
2,834,732	-		PP_2487	0.55	+0.2
2,834,755	+		PP_2487	0.56	+0.5
2,834,791	+		PP_2487	0.59	-0.7
2,834,792	-		PP_2487	0.59	+2.3
2,834,792	-		PP_2487	0.59	-0.6
2,834,792	-		PP_2487	0.59	+3.6
2,834,812	+		PP_2487	0.60	-0.0
2,834,828	-		PP_2487	0.61	-0.1
2,834,853	+		PP_2487	0.63	-0.4
2,834,854	-		PP_2487	0.63	+1.2
2,834,857	+		PP_2487	0.63	-1.4
2,834,857	+		PP_2487	0.63	+0.2
2,834,857	+		PP_2487	0.63	+1.5
2,834,858	-		PP_2487	0.63	+0.5
2,834,858	-		PP_2487	0.63	+0.5
2,834,904	+		PP_2487	0.66	-1.9
2,834,905	-		PP_2487	0.66	+0.1
2,834,905	-		PP_2487	0.66	+2.4
2,835,094	+		PP_2487	0.79	+0.1
2,835,192	+		PP_2487	0.85	+0.8
2,835,192	+		PP_2487	0.85	+0.1
2,835,193	-		PP_2487	0.85	+1.2
2,835,193	-		PP_2487	0.85	+0.5
2,835,298	-				-0.6
2,835,298	-				-2.1
2,835,298	-				-1.2
2,835,318	-				-0.6
2,835,356	+				+0.5
2,835,410	+				+1.1
2,835,411	-				-1.5
2,835,411	-				-0.4
2,835,427	-				+1.7
2,835,436	+				-0.1
2,835,436	+				+0.2
2,835,498	+				-0.2
2,835,498	+				-0.3
2,835,498	+				+0.7
2,835,498	+				-0.3
2,835,498	+				-0.4
2,835,498	+				-0.4
2,835,498	+				-0.8
2,835,498	+				-0.8
2,835,498	+				-0.6
2,835,498	+				-1.1
2,835,498	+				+0.1
2,835,498	+				-1.0
2,835,498	+				-0.4
2,835,498	+				+0.9
2,835,498	+				-0.6
2,835,499	-				-0.1
2,835,499	-				+0.1
2,835,499	-				-0.2
2,835,499	-				+1.6
2,835,499	-				-1.2
2,835,499	-				+0.7
2,835,499	-				-0.7
2,835,499	-				+0.5
2,835,504	+				-0.7
2,835,505	-				+0.2
2,835,505	-				-0.8
2,835,505	-				-1.6
2,835,505	-				-0.7
2,835,505	-				-0.5
2,835,573	+				-0.8
2,835,573	+				+0.9
2,835,573	+				-1.7
2,835,573	+				-0.6
2,835,574	-				+0.4
2,835,574	-				-0.3
2,835,574	-				-0.7
2,835,574	-				-1.3
2,835,577	+				+0.6
2,835,577	+				-1.4
2,835,577	+				+1.0
2,835,577	+				-0.1
2,835,578	-				+0.4
2,835,578	-				+0.6
2,835,578	-				-1.4
2,835,578	-				-0.7
2,835,598	-				-0.5
2,835,598	-				-0.3
2,835,658	+				-1.2
2,835,659	-				-1.0
2,835,659	-				-0.9
2,835,674	+				+1.3
2,835,686	+				+0.6
2,835,686	+				-1.4
2,835,729	+				+0.3
2,835,730	-				+0.8
2,835,812	+		PP_2488	0.11	-1.7
2,835,812	+		PP_2488	0.11	+0.0
2,835,813	-		PP_2488	0.11	-0.6
2,835,813	-		PP_2488	0.11	+0.5
2,835,813	-		PP_2488	0.11	-0.6
2,835,851	+		PP_2488	0.14	-0.2
2,835,851	+		PP_2488	0.14	+1.8
2,835,851	+		PP_2488	0.14	+0.8
2,835,852	-		PP_2488	0.14	-0.2
2,835,852	-		PP_2488	0.14	+1.2
2,835,852	-		PP_2488	0.14	+0.9
2,835,852	-		PP_2488	0.14	-0.3
2,835,852	-		PP_2488	0.14	-0.1
2,835,852	-		PP_2488	0.14	+1.2
2,835,852	-		PP_2488	0.14	-0.1
2,835,854	+		PP_2488	0.14	+0.6
2,835,854	+		PP_2488	0.14	-1.5
2,835,905	+		PP_2488	0.18	+0.1
2,835,970	+		PP_2488	0.22	-0.2
2,835,970	+		PP_2488	0.22	+1.1
2,835,971	-		PP_2488	0.23	+2.3
2,835,971	-		PP_2488	0.23	-2.6
2,835,994	-		PP_2488	0.24	-1.1
2,835,994	-		PP_2488	0.24	+0.3
2,836,007	+		PP_2488	0.25	+0.5
2,836,007	+		PP_2488	0.25	+1.8
2,836,008	-		PP_2488	0.25	+1.6
2,836,034	+		PP_2488	0.27	+0.7
2,836,172	+		PP_2488	0.37	+0.5
2,836,172	+		PP_2488	0.37	-1.2
2,836,173	-		PP_2488	0.37	-0.4
2,836,196	-		PP_2488	0.39	-1.1
2,836,216	+		PP_2488	0.40	-0.3
2,836,216	+		PP_2488	0.40	+1.9
2,836,217	-		PP_2488	0.40	+0.9
2,836,217	-		PP_2488	0.40	+0.4
2,836,253	+		PP_2488	0.43	+2.6
2,836,253	+		PP_2488	0.43	-1.1
2,836,254	-		PP_2488	0.43	+0.2
2,836,307	+		PP_2488	0.47	-0.3
2,836,308	-		PP_2488	0.47	-1.9
2,836,308	-		PP_2488	0.47	+0.1
2,836,353	+		PP_2488	0.50	-0.5
2,836,353	+		PP_2488	0.50	+1.4
2,836,354	-		PP_2488	0.50	+0.7
2,836,460	+		PP_2488	0.58	-2.5
2,836,461	-		PP_2488	0.58	+0.5
2,836,489	+		PP_2488	0.60	+0.8
2,836,515	+		PP_2488	0.62	+0.3
2,836,527	+		PP_2488	0.62	+0.1
2,836,527	+		PP_2488	0.62	-0.1
2,836,528	-		PP_2488	0.63	-0.2
2,836,528	-		PP_2488	0.63	-0.1
2,836,528	-		PP_2488	0.63	-0.4
2,836,563	+		PP_2488	0.65	+1.0
2,836,564	-		PP_2488	0.65	-0.0
2,836,587	+		PP_2488	0.67	+0.8
2,836,605	+		PP_2488	0.68	+0.2
2,836,629	+		PP_2488	0.70	-0.6
2,836,630	-		PP_2488	0.70	-1.3
2,836,636	+		PP_2488	0.70	+1.2
2,836,637	-		PP_2488	0.70	+0.2
2,836,637	-		PP_2488	0.70	+0.1
2,836,637	-		PP_2488	0.70	+0.6
2,836,639	+		PP_2488	0.71	-0.3
2,836,640	-		PP_2488	0.71	+4.0
2,836,665	+		PP_2488	0.72	-0.7
2,836,692	+		PP_2488	0.74	+1.9
2,836,743	+		PP_2488	0.78	-1.3
2,836,763	+		PP_2488	0.79	-0.5
2,836,768	+		PP_2488	0.80	+1.2
2,836,768	+		PP_2488	0.80	-0.4
2,836,771	+		PP_2488	0.80	-0.1
2,836,772	-		PP_2488	0.80	+0.6
2,836,772	-		PP_2488	0.80	-0.3
2,836,843	-		PP_2488	0.85	-1.3
2,836,855	+		PP_2488	0.86	+1.3
2,836,876	-		PP_2488	0.88	+3.9
2,836,949	+				-1.4
2,836,949	+				-1.5
2,836,949	+				-0.5
2,836,950	-				-1.9
2,836,950	-				-1.3
2,837,022	-				+0.5
2,837,023	+				+1.1
2,837,024	-				-0.4
2,837,033	+				+1.9
2,837,033	+				-0.4
2,837,042	-				-0.9
2,837,042	-				+0.3
2,837,232	+				-0.2
2,837,233	-				+0.5
2,837,245	+				-0.3
2,837,246	-				-0.3
2,837,248	-				-0.1
2,837,282	+				-1.0
2,837,326	-				+1.5
2,837,367	-		PP_2489	0.12	-1.5
2,837,367	-		PP_2489	0.12	-0.9
2,837,462	+		PP_2489	0.21	-0.6
2,837,462	+		PP_2489	0.21	-0.4
2,837,463	-		PP_2489	0.21	+1.1
2,837,463	-		PP_2489	0.21	+0.9
2,837,463	-		PP_2489	0.21	-0.4
2,837,536	+		PP_2489	0.28	+0.7
2,837,537	-		PP_2489	0.28	+2.9
2,837,631	-		PP_2489	0.36	+1.9
2,837,642	+		PP_2489	0.37	+1.4
2,837,643	-		PP_2489	0.37	-0.1
2,837,643	-		PP_2489	0.37	+0.3
2,837,669	+		PP_2489	0.40	+0.9
2,837,669	+		PP_2489	0.40	+0.0
2,837,670	-		PP_2489	0.40	-0.7
2,837,670	-		PP_2489	0.40	+1.4
2,837,734	-		PP_2489	0.46	-0.5
2,837,780	+		PP_2489	0.50	+0.8
2,837,781	-		PP_2489	0.50	-0.3
2,837,784	+		PP_2489	0.50	+0.5
2,837,784	+				-0.4
2,837,801	+		PP_2489	0.52	-0.1
2,837,801	+		PP_2489	0.52	-1.0
2,837,802	-		PP_2489	0.52	-0.2
2,837,975	+		PP_2489	0.68	+0.3
2,837,975	+		PP_2489	0.68	+2.8
2,837,976	-		PP_2489	0.68	-0.1
2,837,976	-		PP_2489	0.68	+0.3
2,837,977	+		PP_2489	0.68	+0.4
2,837,977	+		PP_2489	0.68	-0.1
2,837,977	+		PP_2489	0.68	+0.8
2,837,977	+		PP_2489	0.68	+0.5
2,837,977	+		PP_2489	0.68	+0.3
2,837,978	-		PP_2489	0.68	+0.5
2,837,978	-		PP_2489	0.68	-0.8