Strain Fitness in Pseudomonas putida KT2440 around PP_0636

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0635 and PP_0636 are separated by 273 nucleotidesPP_0636 and PP_0637 are separated by 630 nucleotides PP_0635: PP_0635 - Group II intron-encoding maturase, at 741,900 to 743,321 _0635 PP_0636: PP_0636 - Cold shock DNA-binding domain protein, at 743,595 to 744,335 _0636 PP_0637: PP_0637 - transposase, at 744,966 to 746,498 _0637 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1 2 3at 743.385 kb on + strandat 743.425 kb on + strandat 743.450 kb on + strandat 743.451 kb on - strandat 743.451 kb on - strandat 743.454 kb on + strandat 743.454 kb on + strandat 743.490 kb on + strandat 743.490 kb on + strandat 743.490 kb on + strandat 743.491 kb on - strandat 743.491 kb on - strandat 743.491 kb on - strandat 743.521 kb on + strandat 743.522 kb on - strandat 743.522 kb on - strandat 743.552 kb on + strandat 743.553 kb on - strandat 743.569 kb on + strandat 743.570 kb on - strandat 743.596 kb on + strandat 743.597 kb on - strandat 743.612 kb on + strandat 743.612 kb on + strandat 743.612 kb on + strandat 743.612 kb on + strandat 743.616 kb on + strandat 743.616 kb on + strandat 743.616 kb on + strandat 743.616 kb on + strandat 743.616 kb on + strandat 743.617 kb on - strandat 743.617 kb on - strandat 743.678 kb on + strand, within PP_0636at 743.679 kb on - strand, within PP_0636at 743.679 kb on - strand, within PP_0636at 743.679 kb on - strand, within PP_0636at 743.679 kb on - strand, within PP_0636at 743.706 kb on + strand, within PP_0636at 743.769 kb on + strand, within PP_0636at 743.769 kb on + strand, within PP_0636at 743.848 kb on + strand, within PP_0636at 743.876 kb on - strand, within PP_0636at 743.882 kb on - strand, within PP_0636at 743.882 kb on - strand, within PP_0636at 743.908 kb on + strand, within PP_0636at 743.922 kb on + strand, within PP_0636at 743.922 kb on + strand, within PP_0636at 743.922 kb on + strandat 743.923 kb on - strand, within PP_0636at 743.967 kb on + strand, within PP_0636at 743.967 kb on + strand, within PP_0636at 743.968 kb on - strand, within PP_0636at 743.968 kb on - strand, within PP_0636at 743.968 kb on - strand, within PP_0636at 743.970 kb on + strand, within PP_0636at 743.987 kb on + strand, within PP_0636at 743.988 kb on - strand, within PP_0636at 743.988 kb on - strand, within PP_0636at 744.066 kb on + strand, within PP_0636at 744.088 kb on + strand, within PP_0636at 744.094 kb on + strand, within PP_0636at 744.207 kb on + strand, within PP_0636at 744.208 kb on - strand, within PP_0636at 744.308 kb on + strandat 744.309 kb on - strandat 744.309 kb on - strandat 744.369 kb on + strandat 744.369 kb on + strandat 744.380 kb on - strandat 744.380 kb on - strandat 744.399 kb on + strandat 744.400 kb on - strandat 744.455 kb on - strandat 744.475 kb on - strandat 744.532 kb on - strandat 744.552 kb on + strandat 744.552 kb on + strandat 744.572 kb on + strandat 744.572 kb on + strandat 744.671 kb on - strandat 744.729 kb on + strandat 744.733 kb on - strandat 744.785 kb on - strandat 744.888 kb on + strandat 744.907 kb on - strandat 744.907 kb on - strandat 744.916 kb on + strandat 744.916 kb on + strandat 744.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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743,385 + -1.7
743,425 + +0.2
743,450 + +0.5
743,451 - -2.3
743,451 - +0.0
743,454 + -0.5
743,454 + +0.0
743,490 + +0.1
743,490 + +1.4
743,490 + +0.9
743,491 - +0.1
743,491 - -0.4
743,491 - -2.1
743,521 + -1.2
743,522 - +1.2
743,522 - -0.7
743,552 + +0.0
743,553 - -1.5
743,569 + -2.0
743,570 - -0.0
743,596 + +0.1
743,597 - -1.3
743,612 + +0.7
743,612 + +2.5
743,612 + -0.4
743,612 + -0.4
743,616 + -1.0
743,616 + -0.1
743,616 + +0.0
743,616 + +0.6
743,616 + +3.0
743,617 - +0.9
743,617 - +0.1
743,678 + PP_0636 0.11 +2.4
743,679 - PP_0636 0.11 -0.1
743,679 - PP_0636 0.11 +1.1
743,679 - PP_0636 0.11 -0.6
743,679 - PP_0636 0.11 -1.9
743,706 + PP_0636 0.15 +2.8
743,769 + PP_0636 0.23 +1.6
743,769 + PP_0636 0.23 -0.2
743,848 + PP_0636 0.34 +1.1
743,876 - PP_0636 0.38 +1.1
743,882 - PP_0636 0.39 -1.7
743,882 - PP_0636 0.39 +1.1
743,908 + PP_0636 0.42 +0.4
743,922 + PP_0636 0.44 +1.8
743,922 + PP_0636 0.44 +0.8
743,922 + +0.4
743,923 - PP_0636 0.44 -1.7
743,967 + PP_0636 0.50 -1.2
743,967 + PP_0636 0.50 -1.0
743,968 - PP_0636 0.50 -0.3
743,968 - PP_0636 0.50 +1.5
743,968 - PP_0636 0.50 +0.9
743,970 + PP_0636 0.51 +2.5
743,987 + PP_0636 0.53 -1.0
743,988 - PP_0636 0.53 +1.2
743,988 - PP_0636 0.53 -0.9
744,066 + PP_0636 0.64 -0.6
744,088 + PP_0636 0.67 +1.0
744,094 + PP_0636 0.67 +1.9
744,207 + PP_0636 0.83 +0.7
744,208 - PP_0636 0.83 +0.6
744,308 + +0.4
744,309 - +0.7
744,309 - +0.4
744,369 + -1.4
744,369 + +0.5
744,380 - -0.9
744,380 - -0.9
744,399 + -0.5
744,400 - +1.8
744,455 - -1.9
744,475 - -1.4
744,532 - -0.3
744,552 + +0.7
744,552 + +1.0
744,572 + +2.1
744,572 + +0.4
744,671 - +1.2
744,729 + +0.4
744,733 - +1.3
744,785 - -0.1
744,888 + +0.6
744,907 - +0.2
744,907 - +0.9
744,916 + +0.5
744,916 + +0.8
744,945 - -2.1

Or see this region's nucleotide sequence