Strain Fitness in Pseudomonas putida KT2440 around PP_0296

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0294 and PP_0295 overlap by 4 nucleotidesPP_0295 and PP_0296 are separated by 84 nucleotidesPP_0296 and PP_0297 are separated by 452 nucleotides PP_0294: PP_0294 - Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data), at 353,151 to 354,329 _0294 PP_0295: PP_0295 - choline / betaine / carnitine ABC transporter - membrane subunit, at 354,326 to 355,171 _0295 PP_0296: PP_0296 - choline / betaine / carnitine ABC transporter - substrate binding protein, at 355,256 to 356,203 _0296 PP_0297: PP_0297 - L-serine dehydratase, at 356,656 to 358,032 _0297 Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 354.368 kb on - strandat 354.428 kb on - strand, within PP_0295at 354.577 kb on + strand, within PP_0295at 354.655 kb on - strand, within PP_0295at 354.739 kb on + strand, within PP_0295at 354.750 kb on + strand, within PP_0295at 354.802 kb on + strand, within PP_0295at 354.803 kb on - strandat 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.860 kb on + strand, within PP_0295at 354.860 kb on + strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 355.137 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.138 kb on - strandat 355.151 kb on + strandat 355.152 kb on - strandat 355.165 kb on + strandat 355.174 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.194 kb on - strandat 355.194 kb on - strandat 355.242 kb on + strandat 355.243 kb on - strandat 355.243 kb on - strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.250 kb on - strandat 355.264 kb on + strandat 355.264 kb on + strandat 355.264 kb on + strandat 355.265 kb on - strandat 355.265 kb on - strandat 355.265 kb on - strandat 355.404 kb on + strand, within PP_0296at 355.404 kb on + strand, within PP_0296at 355.404 kb on + strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.451 kb on - strand, within PP_0296at 355.451 kb on - strand, within PP_0296at 355.485 kb on + strand, within PP_0296at 355.486 kb on - strand, within PP_0296at 355.486 kb on - strand, within PP_0296at 355.560 kb on + strand, within PP_0296at 355.561 kb on - strand, within PP_0296at 355.771 kb on - strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.864 kb on - strand, within PP_0296at 355.899 kb on - strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 356.037 kb on + strand, within PP_0296at 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.220 kb on + strandat 356.221 kb on - strandat 356.222 kb on - strandat 356.307 kb on + strandat 356.308 kb on - strandat 356.363 kb on + strandat 356.518 kb on - strandat 356.784 kb on - strandat 356.806 kb on + strand, within PP_0297at 356.807 kb on - strand, within PP_0297at 357.020 kb on - strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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354,368 - -1.1
354,428 - PP_0295 0.12 +0.1
354,577 + PP_0295 0.30 -1.1
354,655 - PP_0295 0.39 +0.1
354,739 + PP_0295 0.49 -0.3
354,750 + PP_0295 0.50 +1.0
354,802 + PP_0295 0.56 +0.5
354,803 - +2.5
354,804 + PP_0295 0.57 -2.0
354,804 + PP_0295 0.57 +2.5
354,804 + PP_0295 0.57 +0.8
354,804 + PP_0295 0.57 -0.7
354,804 + PP_0295 0.57 +1.4
354,805 - PP_0295 0.57 +3.6
354,805 - PP_0295 0.57 -2.1
354,805 - PP_0295 0.57 +0.9
354,860 + PP_0295 0.63 +0.5
354,860 + PP_0295 0.63 -1.0
354,861 - PP_0295 0.63 +0.1
354,861 - PP_0295 0.63 -0.8
354,861 - PP_0295 0.63 -1.3
355,137 + -1.4
355,137 + -0.7
355,137 + -1.9
355,137 + -0.8
355,138 - +0.2
355,151 + +0.7
355,152 - +2.1
355,165 + -0.5
355,174 + +0.2
355,193 + +1.5
355,193 + -0.1
355,193 + +0.4
355,193 + +2.8
355,194 - +0.5
355,194 - -1.6
355,242 + +0.9
355,243 - +0.2
355,243 - +0.3
355,249 + -2.1
355,249 + -0.7
355,249 + -0.8
355,249 + -0.6
355,250 - -0.0
355,264 + -0.7
355,264 + +0.3
355,264 + -0.6
355,265 - +1.0
355,265 - -1.1
355,265 - -0.8
355,404 + PP_0296 0.16 -2.8
355,404 + PP_0296 0.16 +0.5
355,404 + PP_0296 0.16 +0.9
355,405 - PP_0296 0.16 +0.1
355,405 - PP_0296 0.16 -2.2
355,405 - PP_0296 0.16 +0.4
355,405 - PP_0296 0.16 -1.2
355,451 - PP_0296 0.21 +1.8
355,451 - PP_0296 0.21 -1.5
355,485 + PP_0296 0.24 +0.1
355,486 - PP_0296 0.24 -2.8
355,486 - PP_0296 0.24 -0.1
355,560 + PP_0296 0.32 -1.1
355,561 - PP_0296 0.32 -0.6
355,771 - PP_0296 0.54 -0.2
355,805 + PP_0296 0.58 -0.6
355,805 + PP_0296 0.58 +0.6
355,805 + PP_0296 0.58 -0.1
355,805 + PP_0296 0.58 -1.5
355,863 + PP_0296 0.64 +0.1
355,863 + PP_0296 0.64 -0.9
355,863 + PP_0296 0.64 +0.6
355,864 - PP_0296 0.64 -0.3
355,899 - PP_0296 0.68 +0.1
355,998 + PP_0296 0.78 -1.0
355,998 + PP_0296 0.78 +0.5
355,998 + PP_0296 0.78 -0.7
355,999 - PP_0296 0.78 -1.6
355,999 - PP_0296 0.78 +9.1
355,999 - PP_0296 0.78 +1.3
356,037 + PP_0296 0.82 +0.3
356,114 + -1.2
356,114 + -1.2
356,114 + +2.7
356,114 + +1.5
356,114 + +1.4
356,220 + -0.6
356,221 - -0.6
356,222 - -1.5
356,307 + +2.0
356,308 - -0.2
356,363 + +0.9
356,518 - +0.9
356,784 - -0.9
356,806 + PP_0297 0.11 +0.3
356,807 - PP_0297 0.11 -1.9
357,020 - PP_0297 0.26 +1.0
357,041 + PP_0297 0.28 +0.7
357,041 + PP_0297 0.28 -1.1
357,042 - PP_0297 0.28 -1.1
357,042 - PP_0297 0.28 +0.7
357,042 - PP_0297 0.28 -0.8
357,082 + PP_0297 0.31 +0.5
357,082 + PP_0297 0.31 -0.1
357,082 + PP_0297 0.31 +0.6
357,082 + PP_0297 0.31 +0.3
357,083 - PP_0297 0.31 +1.2
357,083 - PP_0297 0.31 -1.0
357,083 - PP_0297 0.31 +0.3
357,085 + PP_0297 0.31 +0.7
357,085 + PP_0297 0.31 -0.5
357,086 - PP_0297 0.31 +0.9
357,086 - PP_0297 0.31 -0.2
357,086 - PP_0297 0.31 -1.7

Or see this region's nucleotide sequence