Strain Fitness in Pseudomonas putida KT2440 around PP_0093

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0091 and PP_0092 are separated by 55 nucleotidesPP_0092 and PP_0093 are separated by 85 nucleotidesPP_0093 and PP_0094 are separated by 106 nucleotidesPP_0094 and PP_0095 are separated by 121 nucleotides PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020 _0091 PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489 _0092 PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 PP_0094: PP_0094 - 5'-nucleotidase, at 99,758 to 100,408 _0094 PP_0095: PP_0095 - putative enzyme of unknown function, at 100,530 to 101,078 _0095 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14at 97.626 kb on + strandat 97.630 kb on + strandat 97.631 kb on - strandat 97.665 kb on + strand, within PP_0091at 97.665 kb on + strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.797 kb on + strand, within PP_0091at 97.807 kb on - strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.988 kb on - strandat 97.988 kb on - strandat 97.988 kb on - strandat 98.049 kb on + strandat 98.049 kb on + strandat 98.058 kb on + strandat 98.058 kb on + strandat 98.059 kb on - strandat 98.142 kb on + strandat 98.261 kb on + strand, within PP_0092at 98.287 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.382 kb on - strand, within PP_0092at 98.479 kb on - strandat 98.479 kb on - strandat 98.513 kb on + strandat 98.514 kb on - strandat 98.514 kb on - strandat 98.574 kb on + strandat 98.671 kb on + strandat 98.672 kb on - strandat 98.672 kb on - strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.726 kb on + strand, within PP_0093at 98.726 kb on + strand, within PP_0093at 98.727 kb on - strand, within PP_0093at 98.752 kb on - strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.852 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.956 kb on + strand, within PP_0093at 98.966 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.120 kb on + strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.406 kb on + strand, within PP_0093at 99.448 kb on + strand, within PP_0093at 99.449 kb on - strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.464 kb on + strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.478 kb on - strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.506 kb on - strand, within PP_0093at 99.571 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.770 kb on - strandat 100.014 kb on + strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.096 kb on - strandat 100.096 kb on - strand, within PP_0094at 100.096 kb on - strand, within PP_0094at 100.096 kb on - strandat 100.237 kb on - strand, within PP_0094at 100.410 kb on + strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.469 kb on + strandat 100.469 kb on + strandat 100.470 kb on - strandat 100.546 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.583 kb on - strandat 100.583 kb on - strandat 100.597 kb on + strand, within PP_0095at 100.598 kb on - strand, within PP_0095

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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97,626 + +1.2
97,630 + -0.6
97,631 - +0.6
97,665 + PP_0091 0.14 -1.3
97,665 + PP_0091 0.14 +0.5
97,666 - PP_0091 0.14 -0.3
97,666 - PP_0091 0.14 +0.1
97,666 - PP_0091 0.14 -2.1
97,667 + PP_0091 0.14 -1.4
97,667 + PP_0091 0.14 +0.5
97,667 + PP_0091 0.14 -0.3
97,667 + PP_0091 0.14 -0.5
97,667 + PP_0091 0.14 -0.0
97,668 - PP_0091 0.15 -0.2
97,668 - PP_0091 0.15 -1.2
97,668 - PP_0091 0.15 +1.5
97,668 - PP_0091 0.15 +0.9
97,668 - PP_0091 0.15 -1.8
97,668 - PP_0091 0.15 +0.1
97,668 - PP_0091 0.15 +0.7
97,668 - PP_0091 0.15 -2.0
97,797 + PP_0091 0.46 -1.8
97,807 - PP_0091 0.48 +0.0
97,923 + PP_0091 0.76 -0.2
97,923 + PP_0091 0.76 +0.5
97,924 - PP_0091 0.77 -1.1
97,924 - PP_0091 0.77 +0.1
97,987 + +1.5
97,987 + -0.6
97,987 + -0.6
97,987 + +0.1
97,988 - -0.3
97,988 - +0.6
97,988 - +0.5
98,049 + +2.5
98,049 + +1.3
98,058 + +0.4
98,058 + -2.3
98,059 - -0.8
98,142 + +3.5
98,261 + PP_0092 0.45 +0.6
98,287 + PP_0092 0.51 -0.1
98,381 + PP_0092 0.74 -1.2
98,381 + PP_0092 0.74 +1.0
98,381 + PP_0092 0.74 +2.0
98,382 - PP_0092 0.74 -0.4
98,479 - -0.5
98,479 - -1.1
98,513 + -0.0
98,514 - +1.1
98,514 - -1.2
98,574 + +1.0
98,671 + -1.3
98,672 - +0.7
98,672 - +0.1
98,674 + +1.2
98,674 + -0.3
98,674 + -0.0
98,674 + +0.1
98,675 - +0.3
98,675 - +2.8
98,675 - -1.3
98,726 + PP_0093 0.14 -0.9
98,726 + PP_0093 0.14 -0.4
98,727 - PP_0093 0.14 -0.5
98,752 - PP_0093 0.16 -0.2
98,851 + PP_0093 0.26 +0.4
98,851 + PP_0093 0.26 +1.5
98,852 - PP_0093 0.26 -0.8
98,873 - PP_0093 0.28 -1.5
98,873 - PP_0093 0.28 +0.1
98,956 + PP_0093 0.35 +2.2
98,966 - PP_0093 0.36 +1.7
98,969 - PP_0093 0.37 -1.5
98,969 - PP_0093 0.37 +0.1
98,969 - PP_0093 0.37 +0.3
99,028 + PP_0093 0.42 -2.1
99,028 + PP_0093 0.42 -1.1
99,029 - PP_0093 0.42 -1.0
99,029 - PP_0093 0.42 -0.7
99,029 - PP_0093 0.42 +0.0
99,029 - PP_0093 0.42 -1.5
99,049 + PP_0093 0.44 -0.2
99,049 + PP_0093 0.44 -0.3
99,049 + PP_0093 0.44 +0.5
99,050 - PP_0093 0.44 -0.5
99,050 - PP_0093 0.44 +0.4
99,120 + PP_0093 0.51 -1.6
99,121 - PP_0093 0.51 +3.9
99,121 - PP_0093 0.51 -1.9
99,157 + PP_0093 0.54 +4.7
99,157 + PP_0093 0.54 +0.5
99,157 + PP_0093 0.54 -2.3
99,157 + PP_0093 0.54 +0.2
99,157 + PP_0093 0.54 +0.0
99,157 + PP_0093 0.54 -1.9
99,157 + PP_0093 0.54 +0.5
99,157 + PP_0093 0.54 +1.5
99,158 - PP_0093 0.54 +0.1
99,158 - PP_0093 0.54 +1.9
99,158 - PP_0093 0.54 -1.7
99,158 - PP_0093 0.54 +0.4
99,158 - PP_0093 0.54 -0.0
99,158 - PP_0093 0.54 +14.6
99,334 + PP_0093 0.70 +0.1
99,334 + PP_0093 0.70 +1.0
99,334 + PP_0093 0.70 +1.1
99,335 - PP_0093 0.71 +0.9
99,335 - PP_0093 0.71 +1.0
99,335 - PP_0093 0.71 -1.8
99,406 + PP_0093 0.77 -0.4
99,448 + PP_0093 0.81 +0.1
99,449 - PP_0093 0.81 -0.4
99,463 + PP_0093 0.82 -1.9
99,463 + PP_0093 0.82 -1.0
99,463 + PP_0093 0.82 +1.4
99,463 + PP_0093 0.82 -2.7
99,463 + PP_0093 0.82 -0.2
99,463 + PP_0093 0.82 -0.4
99,463 + PP_0093 0.82 -1.5
99,464 + PP_0093 0.83 -1.9
99,464 - PP_0093 0.83 -0.3
99,464 - PP_0093 0.83 +0.4
99,478 - PP_0093 0.84 -0.4
99,505 + PP_0093 0.86 +1.9
99,505 + PP_0093 0.86 +0.7
99,506 - PP_0093 0.86 +0.4
99,571 + +1.0
99,709 + +0.3
99,709 + +0.6
99,709 + +0.3
99,769 + +1.9
99,769 + +0.1
99,769 + -0.4
99,770 - -1.3
100,014 + PP_0094 0.39 +1.1
100,015 - PP_0094 0.39 +1.6
100,015 - PP_0094 0.39 +0.1
100,015 - PP_0094 0.39 -1.1
100,015 - PP_0094 0.39 +0.9
100,015 - PP_0094 0.39 +1.9
100,095 + PP_0094 0.52 -0.9
100,095 + PP_0094 0.52 +0.7
100,095 + PP_0094 0.52 -0.1
100,096 - +1.9
100,096 - PP_0094 0.52 +0.8
100,096 - PP_0094 0.52 -0.1
100,096 - +1.5
100,237 - PP_0094 0.74 +0.3
100,410 + -0.5
100,411 - -1.1
100,411 - +1.4
100,411 - -1.1
100,411 - -2.4
100,411 - +0.4
100,411 - +0.4
100,469 + +0.5
100,469 + -0.3
100,470 - -0.4
100,546 + -0.8
100,582 + -1.8
100,582 + +0.7
100,582 + +0.7
100,583 - -1.3
100,583 - -0.9
100,597 + PP_0095 0.12 +3.5
100,598 - PP_0095 0.12 -0.7

Or see this region's nucleotide sequence