Strain Fitness in Pseudomonas putida KT2440 around PP_4455

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
5,054,397	-				-0.2
5,054,397	-				+2.2
5,054,451	-				+0.1
5,054,451	-				+0.2
5,054,451	-				-0.3
5,054,451	-				+2.6
5,054,484	-				+0.3
5,054,507	+				-1.0
5,054,507	+				+2.2
5,054,507	+				-0.4
5,054,507	+				-2.5
5,054,507	+				+0.1
5,054,508	-				-0.9
5,054,508	-				+0.1
5,054,508	-				+1.6
5,054,508	-				+0.6
5,054,508	-				-0.2
5,054,508	-				+1.7
5,054,508	-				-0.1
5,054,513	+				-2.2
5,054,513	+				+0.5
5,054,514	-				-0.6
5,054,514	-				+1.3
5,054,514	-				+2.1
5,054,539	+				-0.5
5,054,573	+				-1.9
5,054,765	+		PP_4454	0.29	+1.0
5,054,766	-		PP_4454	0.29	-2.4
5,054,766	-		PP_4454	0.29	-1.4
5,054,798	-		PP_4454	0.32	-0.1
5,054,798	-		PP_4454	0.32	-2.1
5,054,798	-		PP_4454	0.32	+0.2
5,054,798	-		PP_4454	0.32	+5.1
5,054,826	+		PP_4454	0.36	-1.9
5,054,873	+		PP_4454	0.41	-0.4
5,054,873	+		PP_4454	0.41	+0.4
5,054,873	+		PP_4454	0.41	+1.0
5,054,873	+		PP_4454	0.41	+0.9
5,054,873	+		PP_4454	0.41	-0.4
5,054,873	+		PP_4454	0.41	+1.9
5,054,873	+		PP_4454	0.41	-2.2
5,054,873	+		PP_4454	0.41	+0.4
5,054,874	-		PP_4454	0.41	+1.3
5,054,874	-		PP_4454	0.41	-0.5
5,054,874	-		PP_4454	0.41	+0.3
5,054,874	-		PP_4454	0.41	-1.2
5,054,894	-		PP_4454	0.43	-0.5
5,055,041	+		PP_4454	0.60	+0.0
5,055,041	+		PP_4454	0.60	+0.6
5,055,041	+		PP_4454	0.60	-1.8
5,055,041	+		PP_4454	0.60	-0.2
5,055,055	-		PP_4454	0.62	-0.7
5,055,171	+		PP_4454	0.75	-0.5
5,055,171	+		PP_4454	0.75	+1.2
5,055,171	+		PP_4454	0.75	+0.7
5,055,171	+		PP_4454	0.75	+0.5
5,055,171	+		PP_4454	0.75	+0.7
5,055,172	-		PP_4454	0.75	-0.8
5,055,172	-		PP_4454	0.75	-1.2
5,055,218	-		PP_4454	0.80	-1.3
5,055,219	+		PP_4454	0.81	-0.1
5,055,246	+		PP_4454	0.84	-0.7
5,055,247	-		PP_4454	0.84	-0.0
5,055,362	+				-1.0
5,055,382	+				-0.7
5,055,382	+				-0.2
5,055,420	-				-1.1
5,055,442	+				+0.5
5,055,442	+				+0.1
5,055,443	-				-0.4
5,055,494	+		PP_4455	0.12	-1.0
5,055,494	+		PP_4455	0.12	-1.5
5,055,494	+		PP_4455	0.12	-1.0
5,055,494	+		PP_4455	0.12	+0.5
5,055,495	-		PP_4455	0.12	-0.3
5,055,495	-		PP_4455	0.12	+1.1
5,055,594	-		PP_4455	0.22	-2.0
5,055,601	+		PP_4455	0.23	-0.3
5,055,601	+		PP_4455	0.23	-0.9
5,055,602	-		PP_4455	0.23	-1.7
5,055,602	-		PP_4455	0.23	+0.0
5,055,604	+		PP_4455	0.23	-0.7
5,055,605	-		PP_4455	0.23	-0.3
5,055,605	-		PP_4455	0.23	-0.2
5,055,605	-		PP_4455	0.23	-0.6
5,055,630	+		PP_4455	0.26	-0.1
5,055,630	+		PP_4455	0.26	+0.6
5,055,631	-		PP_4455	0.26	-1.1
5,055,660	+		PP_4455	0.29	-0.4
5,055,660	+		PP_4455	0.29	-0.1
5,055,660	+		PP_4455	0.29	+1.1
5,055,695	+		PP_4455	0.33	-1.5
5,055,696	-		PP_4455	0.33	-0.5
5,055,696	-		PP_4455	0.33	+0.5
5,055,696	-		PP_4455	0.33	-0.3
5,055,746	+		PP_4455	0.38	+1.0
5,055,746	+		PP_4455	0.38	+0.1
5,055,746	+		PP_4455	0.38	+0.9
5,055,746	+		PP_4455	0.38	+1.3
5,055,746	+		PP_4455	0.38	-0.5
5,055,746	+		PP_4455	0.38	+0.2
5,055,746	+		PP_4455	0.38	-0.5
5,055,747	-		PP_4455	0.38	+0.1
5,055,747	-		PP_4455	0.38	+1.2
5,055,747	-		PP_4455	0.38	+0.3
5,055,747	-		PP_4455	0.38	-1.2
5,055,938	+		PP_4455	0.59	+0.1
5,055,939	-		PP_4455	0.59	-1.5
5,055,939	-		PP_4455	0.59	+0.1
5,056,043	-		PP_4455	0.70	+0.3
5,056,043	-		PP_4455	0.70	-0.3
5,056,054	+		PP_4455	0.71	-0.6
5,056,054	+		PP_4455	0.71	-0.1
5,056,131	+		PP_4455	0.79	-0.1
5,056,131	+		PP_4455	0.79	-1.3
5,056,131	+		PP_4455	0.79	-2.1
5,056,131	+		PP_4455	0.79	-2.0
5,056,131	+		PP_4455	0.79	-0.1
5,056,132	-		PP_4455	0.79	+0.3
5,056,132	-		PP_4455	0.79	-1.0
5,056,132	-		PP_4455	0.79	-0.5
5,056,132	-		PP_4455	0.79	+0.2
5,056,133	+		PP_4455	0.79	-1.6
5,056,133	+		PP_4455	0.79	-2.3
5,056,133	+		PP_4455	0.79	+0.1
5,056,133	+		PP_4455	0.79	-1.9
5,056,133	+		PP_4455	0.79	+1.0
5,056,133	+		PP_4455	0.79	+0.3
5,056,133	+		PP_4455	0.79	-1.0
5,056,133	+		PP_4455	0.79	-0.2
5,056,133	+		PP_4455	0.79	-0.0
5,056,133	+		PP_4455	0.79	-0.4
5,056,133	+		PP_4455	0.79	-0.0
5,056,133	+		PP_4455	0.79	+1.2
5,056,134	-		PP_4455	0.80	-0.7
5,056,134	-		PP_4455	0.80	+0.5
5,056,134	-		PP_4455	0.80	-0.6
5,056,134	-		PP_4455	0.80	-0.7
5,056,134	-		PP_4455	0.80	-0.2
5,056,134	-		PP_4455	0.80	+2.5
5,056,134	-		PP_4455	0.80	+0.6
5,056,157	-		PP_4455	0.82	+1.7
5,056,157	-		PP_4455	0.82	-0.6
5,056,252	+				+0.5
5,056,253	-				-0.1
5,056,309	-				-1.2
5,056,389	-				+1.4
5,056,389	-				+1.5
5,056,389	-				-1.1
5,056,400	+				-1.7
5,056,400	+				+1.1
5,056,401	-				-0.1
5,056,401	-				-1.4
5,056,445	+				-0.3
5,056,445	+				+0.8
5,056,458	+				-1.5
5,056,458	+				+0.7
5,056,499	+				+0.2
5,056,499	+				-0.4
5,056,500	-				-0.3
5,056,587	+				+0.8
5,056,588	-				+0.3
5,056,588	-				-0.7
5,056,618	+		PP_4456	0.12	-1.8
5,056,619	-		PP_4456	0.12	+0.4
5,056,619	-		PP_4456	0.12	+0.0
5,056,631	-		PP_4456	0.12	+0.6
5,056,639	+		PP_4456	0.13	-0.2
5,056,640	-		PP_4456	0.13	+2.7
5,056,664	+		PP_4456	0.15	-0.7
5,056,664	+		PP_4456	0.15	-1.3
5,056,740	+				+0.5
5,056,740	+		PP_4456	0.20	-0.2
5,056,740	+		PP_4456	0.20	-0.5
5,056,741	-		PP_4456	0.20	-0.6
5,056,741	-		PP_4456	0.20	-0.7
5,056,741	-		PP_4456	0.20	+0.2
5,056,761	+		PP_4456	0.22	-1.4
5,056,762	-		PP_4456	0.22	-1.3
5,056,762	-		PP_4456	0.22	+0.8
5,056,762	-		PP_4456	0.22	-0.1
5,056,762	-		PP_4456	0.22	+0.1
5,056,762	-		PP_4456	0.22	+1.0
5,056,790	+		PP_4456	0.24	-0.6
5,056,790	+		PP_4456	0.24	-0.4
5,056,790	+		PP_4456	0.24	-1.7
5,056,790	+		PP_4456	0.24	-0.8
5,056,791	-		PP_4456	0.24	-1.0
5,056,791	-		PP_4456	0.24	-0.6
5,056,852	+		PP_4456	0.28	+1.9
5,056,852	+		PP_4456	0.28	-0.5
5,056,853	-		PP_4456	0.28	-2.7
5,056,867	+		PP_4456	0.29	+0.1
5,057,044	+		PP_4456	0.42	-1.0
5,057,045	-		PP_4456	0.42	-1.0
5,057,053	+		PP_4456	0.43	-0.0
5,057,053	+		PP_4456	0.43	+1.0
5,057,054	-		PP_4456	0.43	+0.5
5,057,081	+		PP_4456	0.45	-0.6
5,057,081	+		PP_4456	0.45	-0.0
5,057,082	-		PP_4456	0.45	-0.0
5,057,082	-		PP_4456	0.45	+0.1
5,057,305	+		PP_4456	0.61	+0.0
5,057,305	+		PP_4456	0.61	-0.1
5,057,305	+		PP_4456	0.61	+1.3
5,057,305	+		PP_4456	0.61	-0.5
5,057,306	-		PP_4456	0.61	-2.7
5,057,308	+		PP_4456	0.61	-0.1
5,057,308	+		PP_4456	0.61	+0.0
5,057,309	-		PP_4456	0.61	-0.3