Strain Fitness in Pseudomonas putida KT2440 around PP_4137

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,672,232	+		PP_4134	0.51	-0.5
4,672,457	+		PP_4135	0.16	-1.1
4,672,459	+		PP_4135	0.17	+0.3
4,672,459	+		PP_4135	0.17	+1.4
4,672,459	+		PP_4135	0.17	-0.5
4,672,459	+		PP_4135	0.17	+0.4
4,672,459	+		PP_4135	0.17	+0.9
4,672,459	+		PP_4135	0.17	+1.7
4,672,489	+		PP_4135	0.25	-1.1
4,672,489	+		PP_4135	0.25	-0.9
4,672,489	+		PP_4135	0.25	+0.2
4,672,489	+		PP_4135	0.25	+0.4
4,672,489	+		PP_4135	0.25	-0.6
4,672,753	+				-0.8
4,672,847	+		PP_4136	0.35	+0.1
4,672,915	-		PP_4136	0.62	-1.4
4,673,048	+				+0.0
4,673,048	+				-1.7
4,673,048	+				-0.2
4,673,063	+				-0.0
4,673,064	-				-1.0
4,673,102	+				-2.2
4,673,103	-				-1.1
4,673,115	+				+1.7
4,673,125	+				+2.8
4,673,125	+				+0.3
4,673,125	+				+2.3
4,673,125	+				-1.0
4,673,126	-				-0.5
4,673,225	+				-0.2
4,673,225	+				+1.9
4,673,226	-				+3.3
4,673,243	-				-0.3
4,673,243	-				-1.9
4,673,499	-		PP_4137	0.13	-0.7
4,673,571	+		PP_4137	0.16	+1.2
4,673,571	+		PP_4137	0.16	+0.1
4,673,572	-		PP_4137	0.17	+0.1
4,673,572	-		PP_4137	0.17	-1.0
4,673,572	-		PP_4137	0.17	-0.1
4,673,718	+		PP_4137	0.24	-0.1
4,673,718	+		PP_4137	0.24	-1.2
4,673,718	+		PP_4137	0.24	-0.2
4,673,718	+		PP_4137	0.24	-1.0
4,673,718	+		PP_4137	0.24	+1.3
4,673,719	-		PP_4137	0.24	+0.3
4,673,719	-		PP_4137	0.24	-0.3
4,673,758	+		PP_4137	0.26	-0.3
4,673,758	+		PP_4137	0.26	+0.7
4,673,759	-		PP_4137	0.26	+1.6
4,673,763	+		PP_4137	0.26	+0.9
4,673,832	+		PP_4137	0.29	+0.8
4,673,833	-		PP_4137	0.29	-0.5
4,673,835	+		PP_4137	0.29	-0.2
4,673,835	+		PP_4137	0.29	+0.8
4,673,835	+		PP_4137	0.29	-1.2
4,673,835	+		PP_4137	0.29	-1.3
4,673,836	-				-0.5
4,673,836	-		PP_4137	0.29	-0.0
4,673,836	-		PP_4137	0.29	+0.5
4,673,836	-		PP_4137	0.29	-1.2
4,673,860	-		PP_4137	0.30	+1.0
4,673,868	+		PP_4137	0.31	+1.5
4,673,952	+		PP_4137	0.35	-0.3
4,673,953	-		PP_4137	0.35	-0.4
4,673,953	-		PP_4137	0.35	-0.4
4,673,953	-		PP_4137	0.35	-2.4
4,674,042	+		PP_4137	0.39	-0.0
4,674,042	+		PP_4137	0.39	+1.1
4,674,042	+		PP_4137	0.39	+0.6
4,674,043	-		PP_4137	0.39	+1.3
4,674,043	-		PP_4137	0.39	+0.8
4,674,109	-		PP_4137	0.42	+0.8
4,674,147	+		PP_4137	0.44	-0.3
4,674,148	-		PP_4137	0.44	+0.4
4,674,148	-		PP_4137	0.44	+13.0
4,674,202	-		PP_4137	0.47	+1.0
4,674,285	-		PP_4137	0.51	+0.5
4,674,324	-		PP_4137	0.53	+1.3
4,674,456	+		PP_4137	0.59	+0.8
4,674,456	+		PP_4137	0.59	+1.2
4,674,456	+		PP_4137	0.59	-0.6
4,674,456	+		PP_4137	0.59	+0.6
4,674,525	+		PP_4137	0.63	-0.9
4,674,525	+		PP_4137	0.63	-0.3
4,674,550	-		PP_4137	0.64	+0.0
4,674,576	+				+0.8
4,674,577	-		PP_4137	0.65	+0.5
4,674,753	+		PP_4137	0.74	+0.4
4,674,754	-		PP_4137	0.74	-0.3
4,674,763	+		PP_4137	0.74	-2.4
4,674,764	-		PP_4137	0.74	+1.4
4,674,791	-		PP_4137	0.75	+5.6
4,674,791	-		PP_4137	0.75	+0.3
4,674,913	-		PP_4137	0.81	+0.6
4,674,933	+		PP_4137	0.82	-0.8
4,674,934	-		PP_4137	0.82	-1.4
4,674,987	+		PP_4137	0.85	+0.1
4,674,987	+		PP_4137	0.85	-0.9
4,674,988	-		PP_4137	0.85	-0.1
4,674,988	-		PP_4137	0.85	-0.6
4,674,988	-		PP_4137	0.85	+0.8
4,674,988	-		PP_4137	0.85	+1.9
4,674,991	-		PP_4137	0.85	-1.1
4,675,029	+		PP_4137	0.87	-1.7
4,675,029	+		PP_4137	0.87	+0.6
4,675,030	-		PP_4137	0.87	+0.4
4,675,043	+		PP_4137	0.88	-0.1
4,675,044	-		PP_4137	0.88	-0.2
4,675,044	-		PP_4137	0.88	-2.4
4,675,044	-		PP_4137	0.88	+0.5
4,675,074	+		PP_4137	0.89	+0.2
4,675,075	-		PP_4137	0.89	-1.2
4,675,082	+		PP_4137	0.89	+0.3
4,675,082	+		PP_4137	0.89	-0.7
4,675,082	+		PP_4137	0.89	-2.0
4,675,083	-		PP_4137	0.89	-0.5
4,675,083	-		PP_4137	0.89	+0.6
4,675,083	-		PP_4137	0.89	+0.8
4,675,086	+		PP_4137	0.90	+0.1
4,675,087	-		PP_4137	0.90	-0.4
4,675,087	-		PP_4137	0.90	+0.3
4,675,101	+				-0.3
4,675,101	+				+0.6
4,675,102	-				+1.5
4,675,102	-				+0.3
4,675,192	-				-1.0
4,675,192	-				-0.4
4,675,215	+				+0.0
4,675,272	+				-1.5
4,675,287	+				-2.0
4,675,319	-				-1.6
4,675,337	+				-1.8
4,675,372	+				+0.9
4,675,373	-				-0.8
4,675,373	-				+2.0
4,675,526	+		PP_4138	0.22	-0.1
4,675,527	-		PP_4138	0.22	-0.5
4,675,527	-		PP_4138	0.22	+0.1
4,675,724	+		PP_4138	0.57	+1.2
4,675,725	-		PP_4138	0.57	-1.0
4,675,725	-		PP_4138	0.57	+0.6
4,675,725	-		PP_4138	0.57	-1.0
4,675,813	-		PP_4138	0.73	+0.5
4,675,823	+		PP_4138	0.75	-0.9
4,675,910	+				-2.6
4,675,911	-				-0.1
4,675,911	-				-0.5
4,675,992	+				+0.4
4,675,993	-				+0.1
4,676,001	+				-0.7
4,676,001	+				-1.5
4,676,002	-				+0.0
4,676,002	-				+0.2
4,676,002	-				+0.0
4,676,002	-				+1.7
4,676,002	-				+0.8
4,676,005	+				+0.0
4,676,006	-				+0.7
4,676,007	+				-2.3
4,676,007	+				-0.4
4,676,007	+				+0.3
4,676,008	-				-0.7
4,676,077	+				-0.4
4,676,087	+				-0.4
4,676,088	-				-2.9
4,676,088	-				-1.0
4,676,100	+				-0.8
4,676,100	+				+1.2
4,676,101	-				+2.2
4,676,101	-				+0.0
4,676,101	-				-0.1
4,676,133	-				-1.1
4,676,176	+		PP_4139	0.25	-0.1
4,676,177	-		PP_4139	0.25	-1.1
4,676,177	-		PP_4139	0.25	-0.6
4,676,177	-		PP_4139	0.25	+0.4
4,676,249	-		PP_4139	0.58	+3.6
4,676,249	-		PP_4139	0.58	-0.1