Strain Fitness in Pseudomonas putida KT2440 around PP_3955

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,460,634	-		PP_3954	0.10	+4.0
4,460,646	+		PP_3954	0.12	-0.8
4,460,646	+		PP_3954	0.12	-0.4
4,460,646	+		PP_3954	0.12	+0.4
4,460,647	-		PP_3954	0.12	-0.0
4,460,647	-		PP_3954	0.12	+0.1
4,460,647	-		PP_3954	0.12	+0.6
4,460,650	-		PP_3954	0.12	+0.2
4,460,662	+		PP_3954	0.13	+0.6
4,460,662	+		PP_3954	0.13	-1.5
4,460,679	+		PP_3954	0.15	-0.4
4,460,679	+		PP_3954	0.15	+0.2
4,460,679	+		PP_3954	0.15	-1.7
4,460,680	-		PP_3954	0.15	-2.8
4,460,680	-		PP_3954	0.15	+0.7
4,460,692	+		PP_3954	0.17	-2.5
4,460,692	+		PP_3954	0.17	-1.1
4,460,693	-		PP_3954	0.17	-0.6
4,460,693	-		PP_3954	0.17	+0.9
4,460,693	-		PP_3954	0.17	-1.4
4,460,870	+		PP_3954	0.35	-0.2
4,460,883	+		PP_3954	0.37	+0.1
4,460,949	-		PP_3954	0.44	-1.0
4,461,018	-		PP_3954	0.51	+1.2
4,461,045	+		PP_3954	0.54	-2.2
4,461,161	-		PP_3954	0.66	-1.3
4,461,174	-		PP_3954	0.67	+1.3
4,461,243	+		PP_3954	0.74	-0.0
4,461,243	+		PP_3954	0.74	+2.2
4,461,243	+		PP_3954	0.74	+1.6
4,461,243	+		PP_3954	0.74	+1.5
4,461,243	+		PP_3954	0.74	+0.3
4,461,244	-		PP_3954	0.75	-0.1
4,461,244	-		PP_3954	0.75	+0.4
4,461,244	-		PP_3954	0.75	-0.2
4,461,244	-		PP_3954	0.75	-1.5
4,461,244	-		PP_3954	0.75	-0.1
4,461,244	-		PP_3954	0.75	+0.1
4,461,244	-		PP_3954	0.75	-1.6
4,461,244	-		PP_3954	0.75	+0.8
4,461,265	+		PP_3954	0.77	-0.4
4,461,265	+		PP_3954	0.77	+0.0
4,461,265	+		PP_3954	0.77	+0.1
4,461,266	-		PP_3954	0.77	-0.6
4,461,328	-		PP_3954	0.83	+0.6
4,461,346	+		PP_3954	0.85	-1.3
4,461,396	-				-0.3
4,461,512	+				-0.4
4,461,513	-				-0.7
4,461,513	-				-0.2
4,461,641	-				-0.4
4,461,652	+				-1.0
4,461,652	+				+0.1
4,461,653	-				+0.3
4,461,653	-				-0.0
4,461,681	+				+1.0
4,461,690	+				+0.8
4,461,690	+				-0.8
4,461,690	+				-0.5
4,461,690	+				+0.4
4,461,690	+				-0.6
4,461,690	+				+0.8
4,461,691	-				-0.3
4,461,768	+		PP_3955	0.13	+1.0
4,461,777	+		PP_3955	0.13	+0.5
4,461,777	+		PP_3955	0.13	-0.0
4,461,778	-		PP_3955	0.13	-0.5
4,461,778	-		PP_3955	0.13	+1.5
4,461,889	+		PP_3955	0.19	-0.5
4,461,890	-		PP_3955	0.19	-2.5
4,462,023	+		PP_3955	0.25	+0.5
4,462,024	-		PP_3955	0.25	-1.4
4,462,024	-		PP_3955	0.25	-0.2
4,462,038	+		PP_3955	0.26	-0.2
4,462,038	+		PP_3955	0.26	-1.1
4,462,038	+		PP_3955	0.26	+0.8
4,462,038	+		PP_3955	0.26	+1.4
4,462,038	+		PP_3955	0.26	-0.2
4,462,039	-		PP_3955	0.26	-0.3
4,462,039	-		PP_3955	0.26	+0.2
4,462,039	-		PP_3955	0.26	+0.4
4,462,039	-		PP_3955	0.26	+5.2
4,462,053	+		PP_3955	0.27	-0.4
4,462,053	+		PP_3955	0.27	-0.0
4,462,053	+		PP_3955	0.27	-0.9
4,462,053	+		PP_3955	0.27	-0.2
4,462,059	+		PP_3955	0.27	+0.7
4,462,059	+		PP_3955	0.27	-0.9
4,462,060	-		PP_3955	0.27	+2.3
4,462,196	+		PP_3955	0.34	+2.3
4,462,196	+		PP_3955	0.34	+0.0
4,462,272	+		PP_3955	0.37	-0.6
4,462,429	-		PP_3955	0.45	-0.8
4,462,643	-		PP_3955	0.56	+1.7
4,462,897	+		PP_3955	0.68	-1.4
4,462,942	-		PP_3955	0.70	-0.3
4,462,942	-		PP_3955	0.70	+0.6
4,463,008	+		PP_3955	0.74	+0.1
4,463,008	+		PP_3955	0.74	+0.3
4,463,008	+		PP_3955	0.74	+0.6
4,463,009	-		PP_3955	0.74	-0.2
4,463,040	+		PP_3955	0.75	-0.2
4,463,040	+		PP_3955	0.75	-0.7
4,463,040	+		PP_3955	0.75	-0.2
4,463,040	+		PP_3955	0.75	-0.0
4,463,041	-		PP_3955	0.75	+2.5
4,463,041	-		PP_3955	0.75	+3.7
4,463,041	-		PP_3955	0.75	-1.3
4,463,041	-		PP_3955	0.75	+1.1
4,463,041	-		PP_3955	0.75	+0.8
4,463,122	-		PP_3955	0.79	-0.8
4,463,269	-		PP_3955	0.87	-1.2
4,463,269	-		PP_3955	0.87	+0.6
4,463,269	-		PP_3955	0.87	+0.7
4,463,316	+		PP_3955	0.89	+0.9
4,463,316	+		PP_3955	0.89	-0.5
4,463,316	+		PP_3955	0.89	+0.7
4,463,316	+		PP_3955	0.89	-0.3
4,463,317	-		PP_3955	0.89	-0.5
4,463,317	-		PP_3955	0.89	+0.2
4,463,317	-		PP_3955	0.89	+3.2
4,463,317	-		PP_3955	0.89	+0.1
4,463,317	-		PP_3955	0.89	+1.8
4,463,317	-		PP_3955	0.89	+0.2
4,463,437	+				-0.5
4,463,437	+				-0.1
4,463,502	+				-1.9
4,463,600	-		PP_3956	0.15	+0.1
4,463,649	-		PP_3956	0.27	+0.4
4,463,649	-		PP_3956	0.27	-1.4
4,463,649	-		PP_3956	0.27	+0.7
4,463,673	+		PP_3956	0.33	+0.2
4,463,769	+		PP_3956	0.56	-0.9
4,463,769	+		PP_3956	0.56	+1.5
4,463,770	-		PP_3956	0.56	+0.4
4,463,858	+		PP_3956	0.77	-0.4
4,463,859	-		PP_3956	0.77	-1.9
4,463,866	-		PP_3956	0.79	-0.3
4,463,866	-		PP_3956	0.79	-0.1
4,463,895	+		PP_3956	0.86	-0.3
4,464,000	+				-0.8
4,464,000	+				-2.4
4,464,000	+				+0.7
4,464,000	+				-0.0
4,464,001	-				+1.6
4,464,001	-				+0.9
4,464,001	-				-1.5
4,464,018	+				-0.1
4,464,019	-				+3.2
4,464,019	-				-1.0
4,464,019	-				-0.4
4,464,115	-				-2.1
4,464,166	+				-1.0
4,464,167	-				-1.0
4,464,193	-		PP_3957	0.11	+0.8
4,464,193	-		PP_3957	0.11	-2.7
4,464,233	+		PP_3957	0.13	+0.0
4,464,233	+		PP_3957	0.13	+0.1
4,464,234	-		PP_3957	0.13	+0.7
4,464,332	-		PP_3957	0.18	+0.3
4,464,371	-		PP_3957	0.20	-0.0