Strain Fitness in Pseudomonas putida KT2440 around PP_3071

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
3,453,322	+				-0.3
3,453,322	+				+1.0
3,453,322	+				+1.0
3,453,322	+				-1.4
3,453,322	+				+0.3
3,453,323	-				-0.9
3,453,323	-				+2.2
3,453,323	-				+0.6
3,453,323	-				+1.9
3,453,323	-				-0.5
3,453,323	-				-0.5
3,453,323	-				+1.4
3,453,353	+				+0.2
3,453,498	+				+0.4
3,453,498	+				-0.1
3,453,498	+				+0.4
3,453,498	+				+2.7
3,453,498	+				-1.1
3,453,499	-				-0.1
3,453,499	-				+0.6
3,453,499	-				+0.7
3,453,499	-				-0.7
3,453,499	-				-0.0
3,453,500	+				-0.6
3,453,500	+				+1.2
3,453,570	-				-0.3
3,453,840	-				-0.7
3,453,840	-				-2.4
3,453,868	+				-0.5
3,453,868	+				-0.7
3,453,869	-				-0.6
3,453,869	-				-0.2
3,454,076	+				-1.1
3,454,125	+				-2.0
3,454,133	+				+1.8
3,454,133	+				+0.2
3,454,282	-		PP_3071	0.18	-0.1
3,454,416	+		PP_3071	0.24	-0.9
3,454,416	+		PP_3071	0.24	-0.3
3,454,417	-		PP_3071	0.25	+0.1
3,454,417	-				-0.0
3,454,417	-		PP_3071	0.25	-0.6
3,454,553	-		PP_3071	0.31	+1.1
3,454,681	-		PP_3071	0.38	-0.0
3,454,681	-		PP_3071	0.38	+4.0
3,454,681	-		PP_3071	0.38	-0.3
3,454,682	+		PP_3071	0.38	+0.3
3,454,682	+		PP_3071	0.38	-0.9
3,454,682	+		PP_3071	0.38	-0.5
3,454,682	+		PP_3071	0.38	+0.2
3,454,682	+		PP_3071	0.38	-2.3
3,454,683	-		PP_3071	0.38	+1.6
3,454,683	-		PP_3071	0.38	+0.4
3,454,683	-		PP_3071	0.38	-1.6
3,454,683	-		PP_3071	0.38	+0.3
3,454,683	-		PP_3071	0.38	+0.0
3,454,683	-		PP_3071	0.38	-0.3
3,454,683	-		PP_3071	0.38	+0.2
3,454,683	-		PP_3071	0.38	-1.3
3,454,683	-		PP_3071	0.38	+0.5
3,454,683	-				+0.3
3,454,683	-				-0.3
3,454,686	+		PP_3071	0.38	+9.7
3,454,686	+		PP_3071	0.38	-0.2
3,454,686	+		PP_3071	0.38	-0.2
3,454,686	+		PP_3071	0.38	-0.8
3,454,686	+		PP_3071	0.38	+0.3
3,454,686	+		PP_3071	0.38	+3.9
3,454,687	-		PP_3071	0.38	+0.3
3,454,687	-		PP_3071	0.38	+0.2
3,454,692	+		PP_3071	0.39	+2.1
3,454,692	+		PP_3071	0.39	-0.2
3,454,692	+		PP_3071	0.39	-0.4
3,454,692	+		PP_3071	0.39	-0.2
3,454,692	+		PP_3071	0.39	+0.5
3,454,692	+		PP_3071	0.39	+0.1
3,454,692	+		PP_3071	0.39	+0.2
3,454,692	+		PP_3071	0.39	-1.0
3,454,692	+		PP_3071	0.39	-2.3
3,454,692	+		PP_3071	0.39	-0.8
3,454,692	+		PP_3071	0.39	+0.4
3,454,692	+		PP_3071	0.39	+0.5
3,454,692	+		PP_3071	0.39	-0.5
3,454,692	+		PP_3071	0.39	+0.7
3,454,692	+		PP_3071	0.39	-0.8
3,454,692	+		PP_3071	0.39	+0.4
3,454,692	+		PP_3071	0.39	-0.4
3,454,692	+		PP_3071	0.39	+0.9
3,454,693	-		PP_3071	0.39	+1.6
3,454,693	-		PP_3071	0.39	+0.9
3,454,693	-		PP_3071	0.39	+0.7
3,454,693	-		PP_3071	0.39	+0.1
3,454,693	-		PP_3071	0.39	+0.3
3,454,693	-		PP_3071	0.39	+2.6
3,454,693	-		PP_3071	0.39	+0.3
3,454,693	-		PP_3071	0.39	+0.0
3,454,797	+		PP_3071	0.44	+0.4
3,454,798	-		PP_3071	0.44	+0.8
3,454,798	-		PP_3071	0.44	+1.4
3,454,798	-		PP_3071	0.44	-0.3
3,454,839	-		PP_3071	0.46	-0.9
3,454,839	-		PP_3071	0.46	+1.1
3,454,839	-		PP_3071	0.46	-1.2
3,454,887	+		PP_3071	0.49	-2.0
3,454,888	-		PP_3071	0.49	+0.9
3,454,888	-		PP_3071	0.49	-0.4
3,454,888	-		PP_3071	0.49	-0.3
3,454,888	-		PP_3071	0.49	+0.3
3,454,959	+		PP_3071	0.52	+0.9
3,454,959	+		PP_3071	0.52	+0.3
3,454,959	+		PP_3071	0.52	-1.4
3,454,960	-		PP_3071	0.52	+0.5
3,454,962	+		PP_3071	0.52	-2.0
3,454,963	-		PP_3071	0.52	+0.2
3,454,963	-		PP_3071	0.52	-0.2
3,454,963	-		PP_3071	0.52	-1.3
3,455,082	+		PP_3071	0.59	-0.8
3,455,082	+		PP_3071	0.59	-0.6
3,455,091	+		PP_3071	0.59	-1.9
3,455,092	-		PP_3071	0.59	+1.2
3,455,092	-		PP_3071	0.59	+0.7
3,455,298	+		PP_3071	0.70	+0.7
3,455,298	+		PP_3071	0.70	+8.2
3,455,298	+		PP_3071	0.70	+0.9
3,455,299	-		PP_3071	0.70	-0.7
3,455,299	-		PP_3071	0.70	-1.0
3,455,389	+		PP_3071	0.74	+0.0
3,455,446	+		PP_3071	0.77	+0.1
3,455,489	+		PP_3071	0.79	+1.1
3,455,785	-				+0.5
3,455,785	-				+0.1
3,455,805	+				+1.3
3,455,805	+				-1.3
3,455,984	+				-0.2
3,455,984	+				-0.7
3,455,985	-				+0.7
3,455,989	+				+0.7
3,455,989	+				+0.3
3,455,989	+				+0.2
3,455,989	+				-0.4
3,455,990	-				-0.7
3,455,990	-				-1.8
3,455,990	-				-1.7
3,455,990	-				-1.8
3,456,059	+		PP_3072	0.16	+0.3
3,456,059	+		PP_3072	0.16	+3.1
3,456,059	+		PP_3072	0.16	-0.3
3,456,059	+		PP_3072	0.16	-1.2
3,456,059	+		PP_3072	0.16	-0.1
3,456,059	+		PP_3072	0.16	-0.1
3,456,059	+		PP_3072	0.16	+0.3
3,456,060	-		PP_3072	0.16	-0.5
3,456,060	-		PP_3072	0.16	-1.8
3,456,060	-		PP_3072	0.16	+1.1
3,456,060	-		PP_3072	0.16	+0.4
3,456,060	-		PP_3072	0.16	-1.2
3,456,087	-		PP_3072	0.22	+1.0
3,456,087	-		PP_3072	0.22	-0.1
3,456,197	+		PP_3072	0.45	+0.4
3,456,197	+		PP_3072	0.45	+0.2
3,456,197	+		PP_3072	0.45	+1.1
3,456,198	-		PP_3072	0.45	-0.4
3,456,198	-		PP_3072	0.45	-0.7
3,456,198	-		PP_3072	0.45	+1.6
3,456,301	-		PP_3072	0.66	-0.2
3,456,302	+		PP_3072	0.66	+1.0
3,456,302	+		PP_3072	0.66	-1.2
3,456,596	+		PP_3073	0.10	+1.1
3,456,597	-		PP_3073	0.10	+0.4
3,456,749	+		PP_3073	0.30	+0.3
3,456,750	-		PP_3073	0.30	+0.1
3,456,750	-		PP_3073	0.30	+2.3
3,456,750	-		PP_3073	0.30	-0.6
3,456,834	+		PP_3073	0.41	-0.6
3,456,834	+		PP_3073	0.41	-0.2
3,456,835	-		PP_3073	0.41	+0.6
3,456,835	-		PP_3073	0.41	-0.6