Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1985 and PP_1986 overlap by 4 nucleotides PP_1986 and PP_1987 are separated by 118 nucleotides PP_1987 and PP_1988 are separated by 54 nucleotides
PP_1985: PP_1985 - 3-isopropylmalate dehydratase large subunit, at 2,250,670 to 2,252,103
_1985
PP_1986: PP_1986 - 3-isopropylmalate dehydratase small subunit, at 2,252,100 to 2,252,744
_1986
PP_1987: PP_1987 - Methlytransferase, UbiE/COQ5 family, at 2,252,863 to 2,253,627
_1987
PP_1988: PP_1988 - 3-isopropylmalate dehydrogenase, at 2,253,682 to 2,254,764
_1988
Position (kb)
2252
2253 Strain fitness (log2 ratio)
-2
-1
0
1 at 2251.230 kb on + strand, within PP_1985 at 2251.398 kb on + strand, within PP_1985 at 2251.409 kb on - strand, within PP_1985 at 2251.427 kb on - strand, within PP_1985 at 2251.657 kb on + strand, within PP_1985 at 2251.657 kb on + strand, within PP_1985 at 2251.658 kb on - strand, within PP_1985 at 2252.241 kb on + strand, within PP_1986 at 2252.242 kb on - strand, within PP_1986 at 2252.263 kb on - strand, within PP_1986 at 2252.320 kb on - strand, within PP_1986 at 2252.403 kb on + strand, within PP_1986 at 2252.780 kb on - strand at 2252.784 kb on - strand at 2253.076 kb on + strand, within PP_1987 at 2253.385 kb on + strand, within PP_1987 at 2253.555 kb on - strand at 2253.562 kb on + strand at 2253.563 kb on - strand at 2253.563 kb on - strand at 2253.563 kb on - strand at 2253.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 2,251,230 + PP_1985 0.39 -1.8 2,251,398 + PP_1985 0.51 +0.1 2,251,409 - PP_1985 0.52 -2.0 2,251,427 - PP_1985 0.53 -2.5 2,251,657 + PP_1985 0.69 -2.3 2,251,657 + PP_1985 0.69 +0.4 2,251,658 - PP_1985 0.69 -1.9 2,252,241 + PP_1986 0.22 -0.5 2,252,242 - PP_1986 0.22 +1.7 2,252,263 - PP_1986 0.25 -1.2 2,252,320 - PP_1986 0.34 -1.8 2,252,403 + PP_1986 0.47 -0.4 2,252,780 - -1.3 2,252,784 - +0.7 2,253,076 + PP_1987 0.28 -0.7 2,253,385 + PP_1987 0.68 -0.3 2,253,555 - -1.1 2,253,562 + -0.5 2,253,563 - +0.7 2,253,563 - +0.4 2,253,563 - -0.5 2,253,565 + -0.1
Or see this region's nucleotide sequence