Strain Fitness in Pseudomonas putida KT2440 around PP_1072

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
1,226,058	-		PP_1071	0.53	+0.8
1,226,058	-		PP_1071	0.53	+0.1
1,226,206	-		PP_1071	0.69	+0.5
1,226,232	-		PP_1071	0.72	+1.4
1,226,232	-		PP_1071	0.72	+1.1
1,226,232	-		PP_1071	0.72	+0.7
1,226,232	-		PP_1071	0.72	-0.6
1,226,333	+		PP_1071	0.83	+0.1
1,226,482	-				+0.7
1,226,552	-				+0.5
1,226,552	-				-0.5
1,226,623	-				-0.3
1,226,633	+				-0.3
1,226,633	+				+2.2
1,226,634	-				-0.6
1,226,634	-				-0.6
1,226,733	+				+1.0
1,226,733	+				+1.4
1,226,757	+				+0.9
1,226,757	+				-0.9
1,226,757	+				+0.3
1,226,758	-				-1.2
1,226,758	-				+1.8
1,226,758	-				-0.2
1,226,758	-				+1.0
1,226,758	-				+0.7
1,226,758	-				-0.3
1,226,786	-				+1.3
1,226,888	+				-0.5
1,226,928	+				+0.4
1,226,928	+				-0.5
1,226,928	+				+1.2
1,226,928	+				+0.7
1,226,929	-				+0.3
1,226,929	-				-1.0
1,226,929	-				+0.6
1,226,929	-				-0.0
1,226,929	-				-0.3
1,226,929	-				+1.0
1,227,077	+				-0.4
1,227,136	+				-0.5
1,227,136	+				+1.0
1,227,136	+				-0.8
1,227,136	+				-0.9
1,227,136	+				-0.9
1,227,136	+				-2.1
1,227,136	+				+0.4
1,227,136	+				+0.3
1,227,137	-				+0.3
1,227,137	-				+0.1
1,227,137	-				+0.9
1,227,180	+				-0.6
1,227,180	+				+1.4
1,227,180	+				-1.5
1,227,180	+				-0.0
1,227,180	+				+0.5
1,227,181	-				+2.4
1,227,181	-				-1.0
1,227,181	-				-1.2
1,227,184	+				+0.3
1,227,184	+				+0.3
1,227,184	+				+0.6
1,227,184	+				+0.1
1,227,185	-				-0.8
1,227,185	-				-0.7
1,227,185	-				-1.9
1,227,314	-		PP_1072	0.11	+1.5
1,227,314	-		PP_1072	0.11	-0.1
1,227,314	-		PP_1072	0.11	+0.7
1,227,338	+		PP_1072	0.12	+1.8
1,227,338	+		PP_1072	0.12	-3.1
1,227,338	+		PP_1072	0.12	+1.1
1,227,339	-		PP_1072	0.12	-1.2
1,227,339	-		PP_1072	0.12	+4.2
1,227,498	+		PP_1072	0.16	-0.9
1,227,498	+		PP_1072	0.16	-0.4
1,227,499	-		PP_1072	0.16	+1.7
1,227,556	+		PP_1072	0.17	-0.9
1,227,556	+		PP_1072	0.17	+0.7
1,227,556	+		PP_1072	0.17	+0.9
1,227,557	-		PP_1072	0.17	-1.2
1,227,557	-		PP_1072	0.17	+2.3
1,227,557	-		PP_1072	0.17	+1.1
1,227,557	-		PP_1072	0.17	-0.9
1,227,700	+		PP_1072	0.20	+1.2
1,227,701	-		PP_1072	0.20	+0.5
1,227,701	-		PP_1072	0.20	-0.5
1,227,720	+		PP_1072	0.21	+1.4
1,227,721	-		PP_1072	0.21	-1.4
1,227,731	-		PP_1072	0.21	+1.9
1,227,872	+		PP_1072	0.24	-0.7
1,227,872	+		PP_1072	0.24	+0.7
1,227,873	-		PP_1072	0.24	+1.0
1,227,873	-		PP_1072	0.24	-0.1
1,227,873	-		PP_1072	0.24	-0.2
1,227,873	-		PP_1072	0.24	+0.1
1,227,979	+		PP_1072	0.27	+0.2
1,227,980	-		PP_1072	0.27	-1.0
1,227,980	-		PP_1072	0.27	-0.6
1,228,093	+		PP_1072	0.29	+4.0
1,228,429	+		PP_1072	0.37	+0.1
1,228,430	-		PP_1072	0.37	+0.8
1,228,492	+		PP_1072	0.39	+0.2
1,228,492	+		PP_1072	0.39	+0.8
1,228,518	-		PP_1072	0.39	+0.1
1,228,518	-				+0.8
1,228,530	+		PP_1072	0.40	+1.6
1,228,530	+		PP_1072	0.40	-0.4
1,228,548	-				+1.4
1,228,567	+		PP_1072	0.40	+1.2
1,228,567	+		PP_1072	0.40	+0.2
1,228,567	+		PP_1072	0.40	+1.0
1,228,568	-		PP_1072	0.40	-1.4
1,228,568	-		PP_1072	0.40	-1.6
1,228,666	+		PP_1072	0.43	+0.6
1,228,682	+		PP_1072	0.43	+1.9
1,228,682	+		PP_1072	0.43	+0.7
1,228,683	-		PP_1072	0.43	+1.7
1,228,683	-		PP_1072	0.43	+0.9
1,228,683	-		PP_1072	0.43	-0.1
1,228,717	+		PP_1072	0.44	+0.1
1,228,717	+		PP_1072	0.44	-0.5
1,228,717	+		PP_1072	0.44	+0.9
1,228,718	-		PP_1072	0.44	-1.1
1,228,760	+		PP_1072	0.45	-0.6
1,228,797	+		PP_1072	0.46	-1.0
1,228,798	-		PP_1072	0.46	-1.2
1,229,041	-		PP_1072	0.51	-0.1
1,229,093	+		PP_1072	0.53	+0.8
1,229,093	+		PP_1072	0.53	-0.5
1,229,093	+		PP_1072	0.53	+0.5
1,229,093	+		PP_1072	0.53	-0.1
1,229,093	+		PP_1072	0.53	-0.2
1,229,093	+		PP_1072	0.53	-0.8
1,229,094	-		PP_1072	0.53	+0.5
1,229,094	-		PP_1072	0.53	-1.3
1,229,094	-		PP_1072	0.53	+1.9
1,229,101	-		PP_1072	0.53	-1.4
1,229,101	-		PP_1072	0.53	-0.8
1,229,142	+		PP_1072	0.54	+0.1
1,229,143	-		PP_1072	0.54	+2.1
1,229,143	-		PP_1072	0.54	-0.3
1,229,156	-		PP_1072	0.54	+0.5
1,229,156	-		PP_1072	0.54	+0.7
1,229,407	-		PP_1072	0.60	+0.3
1,229,444	+				+0.8
1,229,444	+		PP_1072	0.61	+0.6
1,229,444	+		PP_1072	0.61	-1.6
1,229,444	+		PP_1072	0.61	+0.2
1,229,445	-		PP_1072	0.61	-0.3
1,229,453	-		PP_1072	0.61	+1.8
1,229,453	-		PP_1072	0.61	+0.4
1,229,480	+		PP_1072	0.62	-0.2
1,229,497	+		PP_1072	0.62	+1.8
1,229,498	-		PP_1072	0.62	-0.3
1,229,498	-		PP_1072	0.62	+0.8
1,229,602	-		PP_1072	0.64	+0.1
1,229,856	+		PP_1072	0.70	+0.6
1,229,856	+		PP_1072	0.70	-0.9
1,229,900	+		PP_1072	0.71	+1.5
1,229,990	+		PP_1072	0.73	+1.4
1,230,090	+		PP_1072	0.76	-0.3
1,230,090	+		PP_1072	0.76	-0.3
1,230,090	+		PP_1072	0.76	+0.4
1,230,166	-		PP_1072	0.77	+0.6
1,230,280	-		PP_1072	0.80	-0.7
1,230,330	-		PP_1072	0.81	-1.2
1,230,330	-		PP_1072	0.81	+0.6
1,230,330	-		PP_1072	0.81	-1.3
1,230,623	+		PP_1072	0.88	-1.4
1,230,624	-		PP_1072	0.88	-0.4
1,230,624	-		PP_1072	0.88	+0.3
1,230,714	+				-1.5
1,230,919	+				+1.9
1,230,919	+				+2.2
1,230,959	+				-0.6
1,230,960	-				-0.5
1,230,978	+				-0.1
1,230,978	+				-1.6
1,231,001	+				-2.0
1,231,002	-				-0.5
1,231,002	-				-2.3
1,231,162	+				-0.2
1,231,162	+				-0.2
1,231,163	-				-1.0
1,231,166	+				+0.4
1,231,167	-				-0.4
1,231,183	-				-0.0