Strain Fitness in Pseudomonas putida KT2440 around PP_3997

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3993 and PP_3994 are separated by 1 nucleotidesPP_3994 and PP_3995 overlap by 1 nucleotidesPP_3995 and PP_3996 overlap by 4 nucleotidesPP_3996 and PP_3997 overlap by 4 nucleotidesPP_3997 and PP_3998 are separated by 76 nucleotides PP_3993: PP_3993 - sulfur transfer protein complex, TusD subunit, at 4,503,849 to 4,504,241 _3993 PP_3994: PP_3994 - putative tRNA 5-methylaminomethyl-2-thiouridine synthase (tusC-like), at 4,504,243 to 4,504,602 _3994 PP_3995: PP_3995 - conserved protein of unknown function, at 4,504,602 to 4,504,898 _3995 PP_3996: PP_3996 - sulfur transfer protein, at 4,504,895 to 4,505,230 _3996 PP_3997: PP_3997 - putative Glycosyl transferase, at 4,505,227 to 4,506,228 _3997 PP_3998: PP_3998 - glutathionyl-hydroquinone reductase, at 4,506,305 to 4,507,282 _3998 Position (kb) 4505 4506 4507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4505.518 kb on + strand, within PP_3997at 4505.519 kb on - strand, within PP_3997at 4505.628 kb on + strand, within PP_3997at 4505.628 kb on + strand, within PP_3997at 4505.628 kb on + strand, within PP_3997at 4505.629 kb on - strand, within PP_3997at 4505.629 kb on - strand, within PP_3997at 4505.629 kb on - strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.632 kb on + strand, within PP_3997at 4505.633 kb on - strand, within PP_3997at 4505.633 kb on - strand, within PP_3997at 4505.633 kb on - strand, within PP_3997at 4505.633 kb on - strand, within PP_3997at 4505.633 kb on - strand, within PP_3997at 4505.633 kb on - strandat 4505.634 kb on + strand, within PP_3997at 4505.634 kb on + strand, within PP_3997at 4505.634 kb on - strand, within PP_3997at 4505.635 kb on - strand, within PP_3997at 4505.635 kb on - strand, within PP_3997at 4505.635 kb on - strand, within PP_3997at 4505.635 kb on - strand, within PP_3997at 4505.778 kb on + strand, within PP_3997at 4505.778 kb on + strand, within PP_3997at 4505.779 kb on - strand, within PP_3997at 4505.980 kb on + strand, within PP_3997at 4506.233 kb on + strandat 4506.237 kb on - strandat 4506.237 kb on - strandat 4506.279 kb on - strandat 4506.362 kb on + strandat 4506.363 kb on - strandat 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.620 kb on + strand, within PP_3998at 4506.620 kb on + strand, within PP_3998at 4506.621 kb on - strand, within PP_3998at 4506.635 kb on + strand, within PP_3998at 4506.635 kb on + strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.656 kb on + strand, within PP_3998at 4506.657 kb on - strand, within PP_3998at 4506.657 kb on - strand, within PP_3998at 4506.681 kb on + strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.741 kb on + strand, within PP_3998at 4506.775 kb on + strandat 4506.775 kb on + strand, within PP_3998at 4506.789 kb on - strand, within PP_3998at 4506.836 kb on + strand, within PP_3998at 4506.836 kb on + strand, within PP_3998at 4506.837 kb on - strand, within PP_3998at 4506.861 kb on - strand, within PP_3998at 4506.877 kb on + strand, within PP_3998at 4506.878 kb on - strand, within PP_3998at 4506.878 kb on - strand, within PP_3998at 4506.894 kb on - strand, within PP_3998at 4506.932 kb on + strand, within PP_3998at 4506.933 kb on - strand, within PP_3998at 4506.933 kb on - strand, within PP_3998at 4506.948 kb on + strand, within PP_3998at 4506.949 kb on - strand, within PP_3998at 4506.962 kb on + strand, within PP_3998at 4506.963 kb on - strand, within PP_3998at 4506.977 kb on + strand, within PP_3998at 4506.996 kb on + strand, within PP_3998at 4506.996 kb on + strand, within PP_3998at 4506.997 kb on - strand, within PP_3998at 4506.997 kb on - strand, within PP_3998at 4507.010 kb on - strand, within PP_3998at 4507.076 kb on + strand, within PP_3998at 4507.110 kb on - strand, within PP_3998at 4507.163 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.167 kb on - strand, within PP_3998at 4507.167 kb on - strand, within PP_3998at 4507.167 kb on - strand, within PP_3998

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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4,505,518 + PP_3997 0.29 -0.7
4,505,519 - PP_3997 0.29 +0.5
4,505,628 + PP_3997 0.40 -0.7
4,505,628 + PP_3997 0.40 -1.4
4,505,628 + PP_3997 0.40 -1.0
4,505,629 - PP_3997 0.40 -1.1
4,505,629 - PP_3997 0.40 +0.9
4,505,629 - PP_3997 0.40 -2.3
4,505,632 + PP_3997 0.40 -1.7
4,505,632 + PP_3997 0.40 +0.3
4,505,632 + PP_3997 0.40 -0.2
4,505,632 + PP_3997 0.40 -3.1
4,505,632 + PP_3997 0.40 -0.3
4,505,632 + PP_3997 0.40 -2.0
4,505,632 + PP_3997 0.40 -1.4
4,505,632 + PP_3997 0.40 -1.6
4,505,633 - PP_3997 0.41 -0.3
4,505,633 - PP_3997 0.41 +0.1
4,505,633 - PP_3997 0.41 +1.5
4,505,633 - PP_3997 0.41 -0.3
4,505,633 - PP_3997 0.41 -0.5
4,505,633 - +1.9
4,505,634 + PP_3997 0.41 +1.9
4,505,634 + PP_3997 0.41 -0.7
4,505,634 - PP_3997 0.41 -0.9
4,505,635 - PP_3997 0.41 -2.0
4,505,635 - PP_3997 0.41 +0.1
4,505,635 - PP_3997 0.41 +2.4
4,505,635 - PP_3997 0.41 +0.8
4,505,778 + PP_3997 0.55 -0.9
4,505,778 + PP_3997 0.55 -1.2
4,505,779 - PP_3997 0.55 -2.7
4,505,980 + PP_3997 0.75 +0.7
4,506,233 + -0.3
4,506,237 - +2.0
4,506,237 - +0.5
4,506,279 - -0.3
4,506,362 + +0.5
4,506,363 - -1.2
4,506,452 + PP_3998 0.15 +0.1
4,506,452 + PP_3998 0.15 +0.6
4,506,452 + PP_3998 0.15 +0.9
4,506,452 + PP_3998 0.15 -1.0
4,506,452 + PP_3998 0.15 +1.9
4,506,452 + PP_3998 0.15 +0.1
4,506,452 + PP_3998 0.15 -2.4
4,506,452 + PP_3998 0.15 +4.2
4,506,452 + PP_3998 0.15 -2.8
4,506,453 - PP_3998 0.15 +0.4
4,506,453 - PP_3998 0.15 +0.2
4,506,453 - PP_3998 0.15 +0.9
4,506,453 - PP_3998 0.15 +0.7
4,506,453 - PP_3998 0.15 -0.8
4,506,453 - PP_3998 0.15 +0.4
4,506,453 - PP_3998 0.15 -0.4
4,506,453 - PP_3998 0.15 +2.0
4,506,453 - PP_3998 0.15 -0.2
4,506,453 - PP_3998 0.15 +1.0
4,506,620 + PP_3998 0.32 +0.7
4,506,620 + PP_3998 0.32 +1.1
4,506,621 - PP_3998 0.32 -1.3
4,506,635 + PP_3998 0.34 +1.5
4,506,635 + PP_3998 0.34 +0.8
4,506,636 - PP_3998 0.34 -0.9
4,506,636 - PP_3998 0.34 +1.2
4,506,636 - PP_3998 0.34 -0.8
4,506,656 + PP_3998 0.36 +0.6
4,506,657 - PP_3998 0.36 -2.4
4,506,657 - PP_3998 0.36 +0.2
4,506,681 + PP_3998 0.38 -0.0
4,506,682 - PP_3998 0.39 +1.0
4,506,682 - PP_3998 0.39 -2.0
4,506,682 - PP_3998 0.39 -0.2
4,506,741 + PP_3998 0.45 -0.8
4,506,775 + +0.3
4,506,775 + PP_3998 0.48 +0.3
4,506,789 - PP_3998 0.49 +1.0
4,506,836 + PP_3998 0.54 -2.3
4,506,836 + PP_3998 0.54 +0.2
4,506,837 - PP_3998 0.54 -0.9
4,506,861 - PP_3998 0.57 +0.2
4,506,877 + PP_3998 0.58 -1.6
4,506,878 - PP_3998 0.59 -0.6
4,506,878 - PP_3998 0.59 +0.7
4,506,894 - PP_3998 0.60 +0.1
4,506,932 + PP_3998 0.64 -0.5
4,506,933 - PP_3998 0.64 +0.1
4,506,933 - PP_3998 0.64 -0.7
4,506,948 + PP_3998 0.66 -0.4
4,506,949 - PP_3998 0.66 +0.1
4,506,962 + PP_3998 0.67 -0.8
4,506,963 - PP_3998 0.67 -3.4
4,506,977 + PP_3998 0.69 -1.0
4,506,996 + PP_3998 0.71 +0.6
4,506,996 + PP_3998 0.71 +1.0
4,506,997 - PP_3998 0.71 -0.3
4,506,997 - PP_3998 0.71 -0.5
4,507,010 - PP_3998 0.72 -1.1
4,507,076 + PP_3998 0.79 -0.5
4,507,110 - PP_3998 0.82 -1.3
4,507,163 + PP_3998 0.88 -0.9
4,507,166 + PP_3998 0.88 -0.4
4,507,166 + PP_3998 0.88 -0.0
4,507,166 + PP_3998 0.88 -0.2
4,507,166 + PP_3998 0.88 -0.9
4,507,166 + PP_3998 0.88 +3.0
4,507,166 + PP_3998 0.88 +1.6
4,507,167 - PP_3998 0.88 +0.4
4,507,167 - PP_3998 0.88 +0.2
4,507,167 - PP_3998 0.88 -1.3

Or see this region's nucleotide sequence