Strain Fitness in Pseudomonas putida KT2440 around PP_3664

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3663 and PP_3664 are separated by 76 nucleotidesPP_3664 and PP_3665 are separated by 181 nucleotides PP_3663: PP_3663 - GGDEF domain protein, at 4,160,755 to 4,162,056 _3663 PP_3664: PP_3664 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,162,133 to 4,163,461 _3664 PP_3665: PP_3665 - AraC family transcriptional regulator, at 4,163,643 to 4,164,650 _3665 Position (kb) 4162 4163 4164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4161.239 kb on + strand, within PP_3663at 4161.240 kb on - strand, within PP_3663at 4161.301 kb on + strand, within PP_3663at 4161.301 kb on + strand, within PP_3663at 4161.302 kb on - strand, within PP_3663at 4161.302 kb on - strand, within PP_3663at 4161.440 kb on + strand, within PP_3663at 4161.440 kb on + strand, within PP_3663at 4161.440 kb on + strand, within PP_3663at 4161.440 kb on + strand, within PP_3663at 4161.440 kb on + strand, within PP_3663at 4161.441 kb on - strand, within PP_3663at 4161.467 kb on + strand, within PP_3663at 4161.468 kb on - strand, within PP_3663at 4161.468 kb on - strand, within PP_3663at 4161.468 kb on - strand, within PP_3663at 4161.732 kb on + strand, within PP_3663at 4161.777 kb on + strand, within PP_3663at 4161.777 kb on + strand, within PP_3663at 4161.778 kb on - strand, within PP_3663at 4161.778 kb on - strand, within PP_3663at 4161.778 kb on - strand, within PP_3663at 4161.813 kb on - strand, within PP_3663at 4161.813 kb on - strand, within PP_3663at 4161.857 kb on + strand, within PP_3663at 4161.858 kb on - strand, within PP_3663at 4161.891 kb on + strand, within PP_3663at 4161.891 kb on + strand, within PP_3663at 4161.914 kb on - strand, within PP_3663at 4161.914 kb on - strand, within PP_3663at 4161.921 kb on + strand, within PP_3663at 4161.921 kb on + strand, within PP_3663at 4161.922 kb on - strand, within PP_3663at 4161.922 kb on - strand, within PP_3663at 4161.923 kb on + strand, within PP_3663at 4161.923 kb on + strand, within PP_3663at 4161.923 kb on + strand, within PP_3663at 4161.924 kb on - strand, within PP_3663at 4161.964 kb on + strandat 4161.965 kb on - strandat 4161.965 kb on - strandat 4161.965 kb on - strandat 4162.016 kb on + strandat 4162.017 kb on - strandat 4162.017 kb on - strandat 4162.052 kb on - strandat 4162.057 kb on - strandat 4162.122 kb on + strandat 4162.122 kb on + strandat 4162.123 kb on - strandat 4162.171 kb on - strandat 4162.265 kb on + strandat 4162.265 kb on + strandat 4162.265 kb on + strandat 4162.266 kb on - strand, within PP_3664at 4162.266 kb on - strand, within PP_3664at 4162.266 kb on - strand, within PP_3664at 4162.266 kb on - strand, within PP_3664at 4162.266 kb on - strandat 4162.427 kb on - strand, within PP_3664at 4162.427 kb on - strand, within PP_3664at 4162.427 kb on - strand, within PP_3664at 4162.451 kb on + strand, within PP_3664at 4162.452 kb on - strand, within PP_3664at 4162.452 kb on - strand, within PP_3664at 4162.519 kb on - strand, within PP_3664at 4162.519 kb on - strand, within PP_3664at 4162.524 kb on + strand, within PP_3664at 4162.524 kb on + strand, within PP_3664at 4162.524 kb on + strand, within PP_3664at 4162.524 kb on + strand, within PP_3664at 4162.525 kb on - strand, within PP_3664at 4162.525 kb on - strandat 4162.569 kb on + strand, within PP_3664at 4162.570 kb on - strand, within PP_3664at 4162.570 kb on - strand, within PP_3664at 4162.570 kb on - strand, within PP_3664at 4162.672 kb on - strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.810 kb on - strand, within PP_3664at 4162.868 kb on - strand, within PP_3664at 4162.906 kb on + strand, within PP_3664at 4162.974 kb on + strand, within PP_3664at 4163.010 kb on + strand, within PP_3664at 4163.011 kb on - strand, within PP_3664at 4163.037 kb on + strand, within PP_3664at 4163.038 kb on - strandat 4163.157 kb on + strand, within PP_3664at 4163.268 kb on + strand, within PP_3664at 4163.269 kb on - strand, within PP_3664at 4163.313 kb on + strand, within PP_3664at 4163.314 kb on - strand, within PP_3664at 4163.314 kb on - strand, within PP_3664at 4163.376 kb on + strandat 4163.540 kb on + strandat 4163.540 kb on + strandat 4163.541 kb on - strandat 4163.541 kb on - strandat 4163.564 kb on + strandat 4163.679 kb on - strandat 4163.679 kb on - strandat 4163.679 kb on - strandat 4163.802 kb on + strand, within PP_3665at 4163.803 kb on - strand, within PP_3665at 4163.803 kb on - strand, within PP_3665at 4163.874 kb on + strand, within PP_3665at 4163.874 kb on + strandat 4163.875 kb on - strand, within PP_3665at 4163.945 kb on + strand, within PP_3665at 4164.009 kb on - strand, within PP_3665at 4164.020 kb on + strand, within PP_3665at 4164.024 kb on + strand, within PP_3665at 4164.024 kb on + strand, within PP_3665at 4164.025 kb on - strand, within PP_3665at 4164.156 kb on + strand, within PP_3665at 4164.157 kb on - strand, within PP_3665at 4164.450 kb on + strand, within PP_3665at 4164.451 kb on - strand, within PP_3665at 4164.451 kb on - strand, within PP_3665at 4164.451 kb on - strand, within PP_3665

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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4,161,239 + PP_3663 0.37 +0.4
4,161,240 - PP_3663 0.37 -2.4
4,161,301 + PP_3663 0.42 +0.5
4,161,301 + PP_3663 0.42 +3.5
4,161,302 - PP_3663 0.42 +1.1
4,161,302 - PP_3663 0.42 -2.3
4,161,440 + PP_3663 0.53 +2.6
4,161,440 + PP_3663 0.53 -1.2
4,161,440 + PP_3663 0.53 +0.7
4,161,440 + PP_3663 0.53 -0.2
4,161,440 + PP_3663 0.53 +2.1
4,161,441 - PP_3663 0.53 +0.3
4,161,467 + PP_3663 0.55 -1.3
4,161,468 - PP_3663 0.55 -1.0
4,161,468 - PP_3663 0.55 +2.0
4,161,468 - PP_3663 0.55 -0.7
4,161,732 + PP_3663 0.75 +0.1
4,161,777 + PP_3663 0.78 +0.1
4,161,777 + PP_3663 0.78 -0.8
4,161,778 - PP_3663 0.79 -1.8
4,161,778 - PP_3663 0.79 +0.8
4,161,778 - PP_3663 0.79 +1.4
4,161,813 - PP_3663 0.81 +1.0
4,161,813 - PP_3663 0.81 -1.6
4,161,857 + PP_3663 0.85 -0.8
4,161,858 - PP_3663 0.85 -0.6
4,161,891 + PP_3663 0.87 +1.8
4,161,891 + PP_3663 0.87 -1.0
4,161,914 - PP_3663 0.89 +0.1
4,161,914 - PP_3663 0.89 -1.9
4,161,921 + PP_3663 0.90 +0.3
4,161,921 + PP_3663 0.90 +0.5
4,161,922 - PP_3663 0.90 -0.9
4,161,922 - PP_3663 0.90 -0.7
4,161,923 + PP_3663 0.90 +0.1
4,161,923 + PP_3663 0.90 -0.2
4,161,923 + PP_3663 0.90 +1.4
4,161,924 - PP_3663 0.90 -0.6
4,161,964 + -0.4
4,161,965 - +0.5
4,161,965 - -1.1
4,161,965 - +0.2
4,162,016 + -1.8
4,162,017 - +2.2
4,162,017 - +0.5
4,162,052 - +2.4
4,162,057 - +1.2
4,162,122 + +1.1
4,162,122 + -1.2
4,162,123 - -1.4
4,162,171 - +0.6
4,162,265 + -1.8
4,162,265 + -0.8
4,162,265 + +0.5
4,162,266 - PP_3664 0.10 -0.4
4,162,266 - PP_3664 0.10 -0.6
4,162,266 - PP_3664 0.10 +0.3
4,162,266 - PP_3664 0.10 -0.0
4,162,266 - +0.2
4,162,427 - PP_3664 0.22 +0.2
4,162,427 - PP_3664 0.22 -1.9
4,162,427 - PP_3664 0.22 -0.1
4,162,451 + PP_3664 0.24 +0.6
4,162,452 - PP_3664 0.24 +0.8
4,162,452 - PP_3664 0.24 -0.6
4,162,519 - PP_3664 0.29 +0.4
4,162,519 - PP_3664 0.29 -1.2
4,162,524 + PP_3664 0.29 -1.8
4,162,524 + PP_3664 0.29 -0.3
4,162,524 + PP_3664 0.29 +0.1
4,162,524 + PP_3664 0.29 -0.2
4,162,525 - PP_3664 0.29 -0.9
4,162,525 - +2.8
4,162,569 + PP_3664 0.33 -1.0
4,162,570 - PP_3664 0.33 -1.4
4,162,570 - PP_3664 0.33 +3.0
4,162,570 - PP_3664 0.33 +0.4
4,162,672 - PP_3664 0.41 +0.0
4,162,678 + PP_3664 0.41 -1.6
4,162,678 + PP_3664 0.41 +1.0
4,162,678 + PP_3664 0.41 -0.5
4,162,810 - PP_3664 0.51 -0.8
4,162,868 - PP_3664 0.55 +0.0
4,162,906 + PP_3664 0.58 -0.9
4,162,974 + PP_3664 0.63 -1.6
4,163,010 + PP_3664 0.66 +0.3
4,163,011 - PP_3664 0.66 -0.2
4,163,037 + PP_3664 0.68 -0.3
4,163,038 - +1.8
4,163,157 + PP_3664 0.77 -0.7
4,163,268 + PP_3664 0.85 +2.4
4,163,269 - PP_3664 0.85 +0.2
4,163,313 + PP_3664 0.89 -0.9
4,163,314 - PP_3664 0.89 -0.6
4,163,314 - PP_3664 0.89 +1.1
4,163,376 + -1.4
4,163,540 + -1.0
4,163,540 + +1.4
4,163,541 - +0.6
4,163,541 - -1.4
4,163,564 + -0.5
4,163,679 - +0.5
4,163,679 - -0.0
4,163,679 - -0.8
4,163,802 + PP_3665 0.16 -1.1
4,163,803 - PP_3665 0.16 +1.6
4,163,803 - PP_3665 0.16 +0.9
4,163,874 + PP_3665 0.23 -0.2
4,163,874 + +2.2
4,163,875 - PP_3665 0.23 -0.1
4,163,945 + PP_3665 0.30 -0.6
4,164,009 - PP_3665 0.36 +0.6
4,164,020 + PP_3665 0.37 -1.4
4,164,024 + PP_3665 0.38 -1.6
4,164,024 + PP_3665 0.38 -1.2
4,164,025 - PP_3665 0.38 +1.9
4,164,156 + PP_3665 0.51 +2.0
4,164,157 - PP_3665 0.51 -1.9
4,164,450 + PP_3665 0.80 +1.8
4,164,451 - PP_3665 0.80 -1.3
4,164,451 - PP_3665 0.80 +1.5
4,164,451 - PP_3665 0.80 +0.7

Or see this region's nucleotide sequence