Strain Fitness in Pseudomonas putida KT2440 around PP_3038

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
3,420,881	-		PP_5554	0.89	-0.8
3,420,885	-				-1.0
3,420,902	-				-1.1
3,420,902	-				+1.1
3,420,902	-				+0.4
3,420,902	-				-1.9
3,420,902	-				+1.7
3,420,933	+				-3.1
3,420,977	-				-1.3
3,421,054	+		PP_3036	0.45	-2.1
3,421,055	-		PP_3036	0.46	-1.3
3,421,055	-		PP_3036	0.46	+0.3
3,421,055	-		PP_3036	0.46	+0.2
3,421,055	-		PP_3036	0.46	+0.2
3,421,062	+		PP_3036	0.49	-1.6
3,421,063	-		PP_3036	0.50	+1.7
3,421,194	-		PP_5555	0.13	+1.1
3,421,211	+		PP_5555	0.17	-0.1
3,421,211	+		PP_5555	0.17	-0.4
3,421,300	+		PP_5555	0.34	-0.8
3,421,300	+		PP_5555	0.34	-0.1
3,421,301	-		PP_5555	0.34	+0.5
3,421,301	-		PP_5555	0.34	-2.3
3,421,301	-		PP_5555	0.34	+4.2
3,421,415	+		PP_5555	0.56	+0.9
3,421,415	+		PP_5555	0.56	-0.2
3,421,415	+		PP_5555	0.56	+1.1
3,421,415	+		PP_5555	0.56	-0.1
3,421,416	-		PP_5555	0.56	+0.9
3,421,416	-		PP_5555	0.56	-2.8
3,421,417	+		PP_5555	0.56	-2.0
3,421,417	+		PP_5555	0.56	+0.7
3,421,417	+		PP_5555	0.56	-1.6
3,421,417	+		PP_5555	0.56	+0.8
3,421,418	-		PP_5555	0.57	-0.9
3,421,418	-		PP_5555	0.57	+0.9
3,421,418	-		PP_5555	0.57	-0.5
3,421,427	-		PP_5555	0.58	-0.5
3,421,502	-		PP_5555	0.73	+0.0
3,421,589	+		PP_5555	0.90	+2.2
3,421,589	+		PP_5555	0.90	-1.4
3,421,590	-		PP_5555	0.90	+0.1
3,421,604	+				+0.3
3,421,604	+				+0.4
3,421,605	-				+1.2
3,421,644	-				+0.1
3,421,687	+		PP_3037	0.24	+0.9
3,421,687	+		PP_3037	0.24	+0.6
3,421,688	-		PP_3037	0.24	-1.0
3,421,843	-				+0.6
3,421,851	+				-2.2
3,421,851	+				+2.9
3,421,852	-				-0.7
3,421,852	-				+0.2
3,421,877	-				+1.0
3,421,966	+				-2.3
3,421,967	-				+1.0
3,421,967	-				+0.1
3,421,967	-				-0.2
3,422,196	+		PP_3038	0.16	+0.4
3,422,221	+				+1.4
3,422,222	-		PP_3038	0.17	-1.5
3,422,375	-		PP_3038	0.24	-0.9
3,422,375	-		PP_3038	0.24	+2.0
3,422,464	+		PP_3038	0.28	-1.2
3,422,553	+		PP_3038	0.32	+3.1
3,422,553	+		PP_3038	0.32	-1.1
3,422,554	-		PP_3038	0.32	+2.1
3,422,554	-		PP_3038	0.32	-0.7
3,422,554	-		PP_3038	0.32	+0.8
3,422,554	-		PP_3038	0.32	-1.1
3,422,554	-		PP_3038	0.32	+0.1
3,422,588	+		PP_3038	0.34	-0.6
3,422,589	-		PP_3038	0.34	+0.5
3,422,690	+		PP_3038	0.38	+3.6
3,422,691	-		PP_3038	0.38	-0.1
3,422,725	-		PP_3038	0.40	+2.6
3,422,927	-		PP_3038	0.49	-2.7
3,422,971	+		PP_3038	0.51	+0.2
3,423,121	+		PP_3038	0.58	-0.3
3,423,122	-		PP_3038	0.58	-1.8
3,423,202	+		PP_3038	0.61	-0.1
3,423,203	-		PP_3038	0.62	-1.3
3,423,203	-		PP_3038	0.62	-0.0
3,423,267	+		PP_3038	0.64	+1.9
3,423,268	-		PP_3038	0.64	-0.3
3,423,358	-		PP_3038	0.69	+1.9
3,423,358	-		PP_3038	0.69	-0.9
3,423,405	+		PP_3038	0.71	+1.0
3,423,405	+		PP_3038	0.71	-0.7
3,423,406	-		PP_3038	0.71	+0.5
3,423,486	+		PP_3038	0.74	+5.3
3,423,486	+		PP_3038	0.74	+1.9
3,423,486	+		PP_3038	0.74	-0.5
3,423,487	-		PP_3038	0.74	-0.8
3,423,496	+		PP_3038	0.75	-1.7
3,423,509	-		PP_3038	0.75	+1.8
3,423,574	+		PP_3038	0.78	+0.5
3,423,575	-		PP_3038	0.78	-0.8
3,423,575	-		PP_3038	0.78	+0.1
3,423,575	-		PP_3038	0.78	+0.2
3,423,575	-		PP_3038	0.78	-1.4
3,423,579	+		PP_3038	0.79	-2.5
3,423,579	+		PP_3038	0.79	+0.5
3,423,605	-		PP_3038	0.80	+0.9
3,423,767	+		PP_3038	0.87	-0.5
3,423,767	+		PP_3038	0.87	+3.3
3,423,966	+				-0.3
3,423,967	-				-0.4
3,423,982	+				-0.9
3,424,063	+				-1.2
3,424,063	+				-1.2
3,424,063	+				+1.0
3,424,063	+				-0.7
3,424,063	+				+1.4
3,424,063	+				-1.3
3,424,063	+				-0.2
3,424,064	-				+0.3
3,424,064	-				+0.4
3,424,064	-				-0.0
3,424,137	-		PP_3039	0.24	-0.4
3,424,137	-		PP_3039	0.24	+1.4
3,424,137	-		PP_3039	0.24	+0.2
3,424,205	-		PP_3039	0.43	-1.7
3,424,205	-		PP_3039	0.43	-0.9
3,424,205	-		PP_3039	0.43	-1.1
3,424,205	-		PP_3039	0.43	-0.1
3,424,205	-		PP_3039	0.43	-0.8
3,424,241	+		PP_3039	0.53	-0.1
3,424,241	+		PP_3039	0.53	-0.5
3,424,242	-		PP_3039	0.53	-0.5
3,424,284	+		PP_3039	0.64	-1.4
3,424,285	-		PP_3039	0.65	-1.6
3,424,285	-		PP_3039	0.65	+0.2
3,424,318	-		PP_3039	0.74	-0.1
3,424,334	+				+0.2
3,424,343	+		PP_3039	0.81	+1.1
3,424,344	-		PP_3039	0.81	-0.1
3,424,344	-		PP_3039	0.81	+0.6
3,424,347	+		PP_3039	0.82	-0.2
3,424,347	+		PP_3039	0.82	+0.8
3,424,347	+		PP_3039	0.82	+1.1
3,424,347	+		PP_3039	0.82	-0.3
3,424,348	-		PP_3039	0.82	-1.1
3,424,350	+		PP_3039	0.83	+0.3
3,424,350	+		PP_3039	0.83	+4.8
3,424,350	+		PP_3039	0.83	+2.9
3,424,351	-		PP_3039	0.83	-0.5
3,424,351	-		PP_3039	0.83	-0.4
3,424,360	+		PP_3039	0.85	+0.3
3,424,361	-		PP_3039	0.86	-0.1
3,424,379	+				+0.4
3,424,431	-				+1.1
3,424,474	-				-1.3
3,424,518	+				+4.1
3,424,538	+				-2.1
3,424,539	-				-0.3
3,424,539	-				+0.9
3,424,622	+				+2.9
3,424,647	+				+0.9
3,424,691	+				+0.2
3,424,692	-				+0.1
3,424,715	+				+1.5
3,424,716	-				+0.6
3,424,716	-				-1.1
3,424,730	+				-0.6
3,424,731	-				-1.8
3,424,731	-				-1.2
3,424,767	+				+1.5
3,424,774	+				-0.9
3,424,775	-				+0.2
3,424,790	+				+0.0
3,424,791	-				-0.5
3,424,823	+				-0.4
3,424,946	+				+0.9
3,424,946	+				-1.4
3,424,946	+				-1.1
3,424,946	+				-1.4
3,424,947	-				-1.2