Strain Fitness in Pseudomonas putida KT2440 around PP_0745

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0744 and PP_0745 are separated by 35 nucleotidesPP_0745 and PP_0746 are separated by 2 nucleotidesPP_0746 and PP_0747 are separated by 162 nucleotides PP_0744: PP_0744 - Ferrochelatase, at 862,867 to 863,883 _0744 PP_0745: PP_0745 - putative uracil permease, at 863,919 to 865,184 _0745 PP_0746: PP_0746 - Uracil phosphoribosyltransferase, at 865,187 to 865,825 _0746 PP_0747: PP_0747 - Hypoxanthine-guanine phosphoribosyltransferase, at 865,988 to 866,545 _0747 Position (kb) 863 864 865 866Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.982 kb on - strandat 864.248 kb on + strand, within PP_0745at 864.248 kb on + strand, within PP_0745at 864.249 kb on - strand, within PP_0745at 864.289 kb on + strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.328 kb on + strand, within PP_0745at 864.328 kb on + strandat 864.328 kb on + strand, within PP_0745at 864.329 kb on - strand, within PP_0745at 864.368 kb on + strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.728 kb on - strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 865.005 kb on + strand, within PP_0745at 865.006 kb on - strand, within PP_0745at 865.032 kb on + strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.252 kb on - strand, within PP_0746at 865.252 kb on - strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.608 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.704 kb on + strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.864 kb on - strandat 865.868 kb on + strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.871 kb on + strandat 865.873 kb on + strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.910 kb on + strandat 865.910 kb on + strandat 865.911 kb on - strandat 865.917 kb on + strandat 865.918 kb on - strandat 865.918 kb on - strandat 865.948 kb on - strandat 865.948 kb on - strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.009 kb on - strandat 866.042 kb on + strandat 866.042 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
remove
863,865 + -1.1
863,865 + -1.8
863,865 + +0.3
863,865 + -1.3
863,922 + +1.2
863,922 + -0.8
863,922 + +3.6
863,922 + -2.3
863,923 - +0.4
863,923 - -0.4
863,923 - -0.1
863,923 - +0.0
863,923 - +0.3
863,923 - +0.3
863,982 - -1.1
864,248 + PP_0745 0.26 -0.8
864,248 + PP_0745 0.26 -1.4
864,249 - PP_0745 0.26 +0.5
864,289 + PP_0745 0.29 -1.3
864,290 - PP_0745 0.29 +3.5
864,290 - PP_0745 0.29 +6.3
864,290 - PP_0745 0.29 -0.0
864,328 + PP_0745 0.32 -0.8
864,328 + +0.9
864,328 + PP_0745 0.32 +2.8
864,329 - PP_0745 0.32 +3.4
864,368 + PP_0745 0.35 +0.3
864,422 - PP_0745 0.40 +3.7
864,422 - PP_0745 0.40 +0.9
864,728 - PP_0745 0.64 -0.3
864,895 + PP_0745 0.77 +0.4
864,895 + PP_0745 0.77 -0.9
864,895 + PP_0745 0.77 +0.4
864,895 + PP_0745 0.77 -0.9
864,896 - PP_0745 0.77 -0.6
864,896 - PP_0745 0.77 +1.4
864,896 - PP_0745 0.77 -0.3
865,005 + PP_0745 0.86 +1.0
865,006 - PP_0745 0.86 +0.9
865,032 + PP_0745 0.88 -0.5
865,033 - PP_0745 0.88 -0.3
865,033 - PP_0745 0.88 +0.9
865,252 - PP_0746 0.10 +1.1
865,252 - PP_0746 0.10 -1.2
865,488 + PP_0746 0.47 -2.0
865,488 + PP_0746 0.47 +0.9
865,488 + PP_0746 0.47 +0.4
865,488 + PP_0746 0.47 -0.9
865,489 - PP_0746 0.47 -1.8
865,489 - PP_0746 0.47 +1.5
865,489 - PP_0746 0.47 +0.5
865,489 - PP_0746 0.47 -1.6
865,605 - PP_0746 0.65 -1.0
865,605 - PP_0746 0.65 +0.2
865,607 + PP_0746 0.66 -0.5
865,607 + PP_0746 0.66 -1.9
865,608 - PP_0746 0.66 -0.6
865,672 - PP_0746 0.76 +0.8
865,672 - PP_0746 0.76 +0.5
865,704 + PP_0746 0.81 +0.7
865,705 - PP_0746 0.81 +0.2
865,705 - PP_0746 0.81 +0.7
865,705 - PP_0746 0.81 -0.8
865,864 - -0.4
865,868 + +1.5
865,869 - +1.8
865,869 - +0.3
865,869 - -0.3
865,871 + +1.9
865,873 + +0.4
865,874 - +0.3
865,874 - +1.7
865,874 - +1.4
865,910 + -2.5
865,910 + +1.4
865,911 - +0.1
865,917 + +1.2
865,918 - -0.3
865,918 - -0.4
865,948 - -1.0
865,948 - -0.7
866,008 + -0.4
866,008 + +0.5
866,008 + +0.6
866,009 - +2.9
866,042 + -0.1
866,042 + +1.3

Or see this region's nucleotide sequence