Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0514 and PP_0515 are separated by 42 nucleotides PP_0515 and PP_0516 are separated by 0 nucleotides
PP_0514: PP_0514 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase, at 600,650 to 601,786
_0514
PP_0515: PP_0515 - Riboflavin synthase, at 601,829 to 602,494
_0515
PP_0516: PP_0516 - 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, at 602,495 to 603,604
_0516
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.783 kb on - strand at 601.783 kb on - strand at 601.783 kb on - strand at 601.902 kb on - strand, within PP_0515 at 601.902 kb on - strand, within PP_0515 at 601.905 kb on + strand, within PP_0515 at 601.905 kb on + strand, within PP_0515 at 601.905 kb on + strand, within PP_0515 at 601.905 kb on + strand, within PP_0515 at 601.906 kb on - strand, within PP_0515 at 601.906 kb on - strand, within PP_0515 at 601.968 kb on + strand, within PP_0515 at 601.968 kb on + strand, within PP_0515 at 601.968 kb on + strand, within PP_0515 at 601.968 kb on + strand, within PP_0515 at 601.968 kb on + strand, within PP_0515 at 601.969 kb on - strand, within PP_0515 at 601.969 kb on - strand, within PP_0515 at 601.969 kb on - strand, within PP_0515 at 601.969 kb on - strand, within PP_0515 at 601.969 kb on - strand, within PP_0515 at 602.222 kb on + strand, within PP_0515 at 602.222 kb on + strand, within PP_0515 at 602.222 kb on + strand, within PP_0515 at 602.222 kb on + strand, within PP_0515 at 602.223 kb on - strand, within PP_0515 at 603.189 kb on - strand, within PP_0516 at 603.189 kb on - strand, within PP_0516 at 603.189 kb on - strand, within PP_0516 at 603.467 kb on + strand, within PP_0516 at 603.467 kb on + strand, within PP_0516 at 603.467 kb on + strand, within PP_0516
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 601,783 - -0.4 601,783 - +0.8 601,783 - +2.6 601,902 - PP_0515 0.11 -0.1 601,902 - PP_0515 0.11 -1.1 601,905 + PP_0515 0.11 -0.9 601,905 + PP_0515 0.11 +1.0 601,905 + PP_0515 0.11 +0.5 601,905 + PP_0515 0.11 -0.4 601,906 - PP_0515 0.12 -0.6 601,906 - PP_0515 0.12 -0.6 601,968 + PP_0515 0.21 +0.5 601,968 + PP_0515 0.21 +0.4 601,968 + PP_0515 0.21 -0.4 601,968 + PP_0515 0.21 -0.4 601,968 + PP_0515 0.21 -0.6 601,969 - PP_0515 0.21 -0.1 601,969 - PP_0515 0.21 -2.0 601,969 - PP_0515 0.21 -0.6 601,969 - PP_0515 0.21 +0.1 601,969 - PP_0515 0.21 -0.4 602,222 + PP_0515 0.59 +1.5 602,222 + PP_0515 0.59 -1.0 602,222 + PP_0515 0.59 -0.8 602,222 + PP_0515 0.59 -0.9 602,223 - PP_0515 0.59 -2.3 603,189 - PP_0516 0.63 +0.2 603,189 - PP_0516 0.63 +1.4 603,189 - PP_0516 0.63 +0.5 603,467 + PP_0516 0.88 +0.4 603,467 + PP_0516 0.88 -0.1 603,467 + PP_0516 0.88 +0.1
Or see this region's nucleotide sequence