Strain Fitness in Pseudomonas putida KT2440 around PP_0256

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0254 and PP_0255 are separated by 56 nucleotidesPP_0255 and PP_0256 are separated by 196 nucleotidesPP_0256 and PP_0257 are separated by 5 nucleotides PP_0254: PP_0254 - conserved protein of unknown function, at 308,854 to 309,294 _0254 PP_0255: PP_0255 - conserved exported protein of unknown function, at 309,351 to 309,833 _0255 PP_0256: PP_0256 - putative oxidoreductase, at 310,030 to 312,375 _0256 PP_0257: PP_0257 - protein sulfur transferase, at 312,381 to 313,211 _0257 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 309.134 kb on + strand, within PP_0254at 309.134 kb on + strand, within PP_0254at 309.135 kb on - strand, within PP_0254at 309.139 kb on + strand, within PP_0254at 309.292 kb on + strandat 309.353 kb on - strandat 309.388 kb on + strandat 309.388 kb on + strandat 309.389 kb on - strandat 309.389 kb on - strandat 309.487 kb on + strand, within PP_0255at 309.487 kb on + strand, within PP_0255at 309.487 kb on + strand, within PP_0255at 309.487 kb on + strand, within PP_0255at 309.488 kb on - strand, within PP_0255at 309.488 kb on - strand, within PP_0255at 309.488 kb on - strand, within PP_0255at 309.488 kb on - strand, within PP_0255at 309.492 kb on - strand, within PP_0255at 309.535 kb on + strand, within PP_0255at 309.535 kb on + strand, within PP_0255at 309.535 kb on + strand, within PP_0255at 309.535 kb on + strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.536 kb on - strand, within PP_0255at 309.539 kb on + strand, within PP_0255at 309.539 kb on + strand, within PP_0255at 309.575 kb on + strand, within PP_0255at 309.823 kb on + strandat 309.823 kb on + strandat 309.824 kb on - strandat 309.824 kb on - strandat 309.824 kb on - strandat 309.847 kb on + strandat 309.847 kb on + strandat 309.848 kb on - strandat 309.848 kb on - strandat 309.874 kb on - strandat 309.919 kb on + strandat 309.942 kb on - strandat 309.946 kb on - strandat 309.985 kb on + strandat 310.102 kb on - strandat 310.148 kb on + strandat 310.151 kb on + strandat 310.151 kb on + strandat 310.152 kb on - strandat 310.174 kb on + strandat 310.174 kb on + strandat 310.194 kb on + strandat 310.349 kb on + strand, within PP_0256at 310.353 kb on + strand, within PP_0256at 310.353 kb on + strand, within PP_0256at 310.354 kb on - strand, within PP_0256at 310.354 kb on - strand, within PP_0256at 310.364 kb on + strand, within PP_0256at 310.365 kb on - strand, within PP_0256at 310.365 kb on - strand, within PP_0256at 310.423 kb on + strand, within PP_0256at 310.424 kb on - strand, within PP_0256at 310.424 kb on - strand, within PP_0256at 310.523 kb on + strand, within PP_0256at 310.524 kb on - strand, within PP_0256at 310.608 kb on - strand, within PP_0256at 310.633 kb on + strand, within PP_0256at 310.634 kb on - strand, within PP_0256at 310.911 kb on + strand, within PP_0256at 310.911 kb on + strand, within PP_0256at 310.912 kb on - strand, within PP_0256at 311.273 kb on + strand, within PP_0256at 311.273 kb on + strand, within PP_0256at 311.274 kb on - strand, within PP_0256at 311.274 kb on - strand, within PP_0256at 311.274 kb on - strand, within PP_0256at 311.274 kb on - strand, within PP_0256at 311.274 kb on - strand, within PP_0256at 311.363 kb on + strand, within PP_0256at 311.740 kb on - strand, within PP_0256at 311.828 kb on + strand, within PP_0256at 311.850 kb on - strand, within PP_0256at 311.850 kb on - strand, within PP_0256at 311.850 kb on - strand, within PP_0256at 311.855 kb on + strand, within PP_0256at 311.856 kb on - strand, within PP_0256at 311.856 kb on - strand, within PP_0256at 311.889 kb on - strand, within PP_0256at 311.889 kb on - strand, within PP_0256at 312.023 kb on + strand, within PP_0256at 312.105 kb on + strand, within PP_0256at 312.106 kb on - strand, within PP_0256at 312.250 kb on - strandat 312.250 kb on - strandat 312.279 kb on + strandat 312.280 kb on - strandat 312.314 kb on + strandat 312.314 kb on + strandat 312.323 kb on + strandat 312.324 kb on - strandat 312.382 kb on + strandat 312.383 kb on - strandat 312.404 kb on - strandat 312.404 kb on - strandat 312.437 kb on + strandat 312.925 kb on + strand, within PP_0257at 312.926 kb on - strand, within PP_0257at 312.926 kb on - strand, within PP_0257at 312.926 kb on - strand, within PP_0257at 313.069 kb on + strand, within PP_0257at 313.069 kb on + strand, within PP_0257at 313.069 kb on + strand, within PP_0257at 313.069 kb on + strand, within PP_0257at 313.070 kb on - strand, within PP_0257at 313.070 kb on - strand, within PP_0257at 313.139 kb on - strandat 313.144 kb on + strandat 313.144 kb on + strandat 313.145 kb on - strandat 313.145 kb on - strandat 313.241 kb on + strandat 313.289 kb on + strandat 313.290 kb on - strandat 313.299 kb on + strandat 313.300 kb on - strandat 313.300 kb on - strandat 313.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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309,134 + PP_0254 0.63 +0.4
309,134 + PP_0254 0.63 +0.9
309,135 - PP_0254 0.64 -0.4
309,139 + PP_0254 0.65 +0.5
309,292 + +1.0
309,353 - +3.0
309,388 + +5.3
309,388 + +1.4
309,389 - -0.4
309,389 - -0.2
309,487 + PP_0255 0.28 -0.9
309,487 + PP_0255 0.28 +0.1
309,487 + PP_0255 0.28 +2.2
309,487 + PP_0255 0.28 -0.1
309,488 - PP_0255 0.28 -0.1
309,488 - PP_0255 0.28 -0.6
309,488 - PP_0255 0.28 -0.2
309,488 - PP_0255 0.28 +2.2
309,492 - PP_0255 0.29 -1.4
309,535 + PP_0255 0.38 +0.0
309,535 + PP_0255 0.38 -0.4
309,535 + PP_0255 0.38 +1.8
309,535 + PP_0255 0.38 +0.4
309,536 - PP_0255 0.38 -0.3
309,536 - PP_0255 0.38 -0.2
309,536 - PP_0255 0.38 -3.3
309,536 - PP_0255 0.38 -0.4
309,536 - PP_0255 0.38 -0.1
309,536 - PP_0255 0.38 -1.3
309,536 - PP_0255 0.38 -0.4
309,536 - PP_0255 0.38 +2.3
309,536 - PP_0255 0.38 -0.4
309,539 + PP_0255 0.39 +0.5
309,539 + PP_0255 0.39 +0.2
309,575 + PP_0255 0.46 -2.3
309,823 + -2.2
309,823 + +0.0
309,824 - +0.1
309,824 - +1.1
309,824 - +0.4
309,847 + -1.2
309,847 + +0.2
309,848 - +0.9
309,848 - +4.6
309,874 - -0.3
309,919 + -2.9
309,942 - -0.3
309,946 - -1.0
309,985 + +1.1
310,102 - -0.1
310,148 + +1.2
310,151 + -0.0
310,151 + +4.4
310,152 - +2.9
310,174 + -0.3
310,174 + -0.8
310,194 + -0.9
310,349 + PP_0256 0.14 +4.3
310,353 + PP_0256 0.14 +0.7
310,353 + PP_0256 0.14 +3.5
310,354 - PP_0256 0.14 +0.4
310,354 - PP_0256 0.14 -1.9
310,364 + PP_0256 0.14 +0.6
310,365 - PP_0256 0.14 +0.1
310,365 - PP_0256 0.14 -1.1
310,423 + PP_0256 0.17 +1.0
310,424 - PP_0256 0.17 -0.1
310,424 - PP_0256 0.17 +0.4
310,523 + PP_0256 0.21 -2.2
310,524 - PP_0256 0.21 +1.0
310,608 - PP_0256 0.25 -0.1
310,633 + PP_0256 0.26 -0.4
310,634 - PP_0256 0.26 +0.6
310,911 + PP_0256 0.38 -0.2
310,911 + PP_0256 0.38 -2.5
310,912 - PP_0256 0.38 +1.1
311,273 + PP_0256 0.53 -0.2
311,273 + PP_0256 0.53 -0.1
311,274 - PP_0256 0.53 -0.8
311,274 - PP_0256 0.53 +0.9
311,274 - PP_0256 0.53 +0.5
311,274 - PP_0256 0.53 +3.0
311,274 - PP_0256 0.53 +3.7
311,363 + PP_0256 0.57 -2.5
311,740 - PP_0256 0.73 -0.7
311,828 + PP_0256 0.77 -0.6
311,850 - PP_0256 0.78 -0.1
311,850 - PP_0256 0.78 +2.2
311,850 - PP_0256 0.78 +0.5
311,855 + PP_0256 0.78 +1.5
311,856 - PP_0256 0.78 +0.6
311,856 - PP_0256 0.78 +0.3
311,889 - PP_0256 0.79 +4.4
311,889 - PP_0256 0.79 +1.2
312,023 + PP_0256 0.85 +0.1
312,105 + PP_0256 0.88 +5.8
312,106 - PP_0256 0.88 -0.0
312,250 - -1.3
312,250 - +1.7
312,279 + +0.7
312,280 - +0.9
312,314 + -2.3
312,314 + -0.7
312,323 + -0.9
312,324 - +0.7
312,382 + +2.2
312,383 - -1.4
312,404 - +0.3
312,404 - +0.0
312,437 + -0.4
312,925 + PP_0257 0.65 -1.2
312,926 - PP_0257 0.66 -1.6
312,926 - PP_0257 0.66 -1.4
312,926 - PP_0257 0.66 -0.7
313,069 + PP_0257 0.83 -2.0
313,069 + PP_0257 0.83 +0.9
313,069 + PP_0257 0.83 -0.5
313,069 + PP_0257 0.83 -0.8
313,070 - PP_0257 0.83 -3.1
313,070 - PP_0257 0.83 -0.5
313,139 - -1.5
313,144 + -1.9
313,144 + -0.9
313,145 - +1.4
313,145 - -0.4
313,241 + -1.8
313,289 + -0.5
313,290 - +0.6
313,299 + -1.9
313,300 - +0.1
313,300 - +0.8
313,336 - +0.3

Or see this region's nucleotide sequence