Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0761 and PP_0762 are separated by 54 nucleotides PP_0762 and PP_0763 are separated by 293 nucleotides
PP_0761: PP_0761 - Ribosomal RNA small subunit methyltransferase C, at 876,160 to 877,158
_0761
PP_0762: PP_0762 - Glycerate dehydrogenase, at 877,213 to 878,178
_0762
PP_0763: PP_0763 - Medium-chain-fatty-acid CoA ligase, at 878,472 to 880,154
_0763
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 876.338 kb on + strand, within PP_0761 at 876.346 kb on - strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.380 kb on - strand, within PP_0761 at 876.381 kb on + strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.621 kb on + strand, within PP_0761 at 876.621 kb on + strand, within PP_0761 at 876.650 kb on - strand, within PP_0761 at 876.863 kb on + strand, within PP_0761 at 876.864 kb on - strand, within PP_0761 at 876.908 kb on + strand, within PP_0761 at 877.192 kb on + strand at 877.192 kb on + strand at 877.192 kb on + strand at 877.527 kb on + strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.645 kb on + strand, within PP_0762 at 877.646 kb on - strand, within PP_0762 at 877.740 kb on + strand, within PP_0762 at 877.805 kb on + strand, within PP_0762 at 877.806 kb on - strand, within PP_0762 at 877.849 kb on - strand, within PP_0762 at 877.849 kb on - strand at 877.849 kb on - strand, within PP_0762 at 878.332 kb on - strand at 878.332 kb on - strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.429 kb on - strand at 878.512 kb on - strand at 878.512 kb on - strand at 878.518 kb on - strand at 878.583 kb on + strand at 878.607 kb on + strand at 878.607 kb on + strand at 878.608 kb on - strand at 878.608 kb on - strand at 878.856 kb on + strand, within PP_0763 at 878.955 kb on + strand, within PP_0763 at 878.956 kb on - strand, within PP_0763 at 878.956 kb on - strand, within PP_0763 at 878.988 kb on + strand, within PP_0763 at 879.027 kb on - strand, within PP_0763 at 879.027 kb on - strand, within PP_0763 at 879.033 kb on + strand, within PP_0763 at 879.033 kb on + strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.129 kb on - strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.166 kb on - strand, within PP_0763
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 876,338 + PP_0761 0.18 -0.0 876,346 - PP_0761 0.19 +1.0 876,379 + PP_0761 0.22 -1.2 876,379 + PP_0761 0.22 -0.8 876,379 + PP_0761 0.22 -0.2 876,379 + PP_0761 0.22 +1.0 876,380 - PP_0761 0.22 -1.0 876,381 + PP_0761 0.22 -0.3 876,382 - PP_0761 0.22 -1.8 876,382 - PP_0761 0.22 +0.1 876,382 - PP_0761 0.22 +0.3 876,621 + PP_0761 0.46 -1.2 876,621 + PP_0761 0.46 -0.6 876,650 - PP_0761 0.49 +1.5 876,863 + PP_0761 0.70 -0.4 876,864 - PP_0761 0.70 -1.4 876,908 + PP_0761 0.75 +1.3 877,192 + -0.9 877,192 + +1.4 877,192 + -0.3 877,527 + PP_0762 0.33 +0.3 877,528 - PP_0762 0.33 +0.3 877,528 - PP_0762 0.33 -0.0 877,645 + PP_0762 0.45 +0.4 877,646 - PP_0762 0.45 +6.7 877,740 + PP_0762 0.55 +0.4 877,805 + PP_0762 0.61 -0.8 877,806 - PP_0762 0.61 -1.6 877,849 - PP_0762 0.66 +0.2 877,849 - +1.3 877,849 - PP_0762 0.66 +1.2 878,332 - -0.4 878,332 - -2.4 878,368 + -1.7 878,368 + -1.0 878,368 + -0.1 878,368 + -2.6 878,368 + +2.3 878,368 + +0.8 878,369 - +0.9 878,369 - +1.1 878,369 - -0.6 878,369 - -0.2 878,369 - +0.1 878,369 - -0.9 878,369 - -0.6 878,369 - -1.6 878,369 - +1.7 878,429 - -0.2 878,512 - +1.0 878,512 - +1.3 878,518 - +0.2 878,583 + +1.5 878,607 + +0.8 878,607 + -0.3 878,608 - +0.3 878,608 - -0.4 878,856 + PP_0763 0.23 +0.9 878,955 + PP_0763 0.29 -0.5 878,956 - PP_0763 0.29 +0.4 878,956 - PP_0763 0.29 +1.0 878,988 + PP_0763 0.31 -1.6 879,027 - PP_0763 0.33 +0.1 879,027 - PP_0763 0.33 +0.2 879,033 + PP_0763 0.33 +0.0 879,033 + PP_0763 0.33 +1.8 879,034 - PP_0763 0.33 -0.4 879,034 - PP_0763 0.33 -0.8 879,034 - PP_0763 0.33 +1.1 879,129 - PP_0763 0.39 +0.8 879,165 + PP_0763 0.41 -1.9 879,165 + PP_0763 0.41 +0.7 879,165 + PP_0763 0.41 +1.2 879,165 + PP_0763 0.41 -0.8 879,165 + PP_0763 0.41 +0.0 879,165 + PP_0763 0.41 +0.3 879,166 - PP_0763 0.41 -0.3
Or see this region's nucleotide sequence