Strain Fitness in Pseudomonas putida KT2440 around PP_0507

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0506 and PP_0507 overlap by 1 nucleotidesPP_0507 and PP_0508 are separated by 0 nucleotidesPP_0508 and PP_0509 are separated by 130 nucleotides PP_0506: PP_0506 - putative ABC efflux transporter, permease protein, at 594,888 to 596,153 _0506 PP_0507: PP_0507 - putative ABC efflux transporter, ATP-binding protein, at 596,153 to 596,863 _0507 PP_0508: PP_0508 - conserved exported protein of unknown function, at 596,864 to 597,445 _0508 PP_0509: PP_0509 - conserved protein of unknown function, at 597,576 to 597,920 _0509 Position (kb) 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 595.264 kb on - strand, within PP_0506at 595.335 kb on + strand, within PP_0506at 595.335 kb on + strand, within PP_0506at 595.336 kb on - strand, within PP_0506at 595.336 kb on - strand, within PP_0506at 595.501 kb on - strand, within PP_0506at 595.551 kb on - strand, within PP_0506at 595.590 kb on + strand, within PP_0506at 595.605 kb on - strand, within PP_0506at 595.681 kb on + strand, within PP_0506at 595.681 kb on + strand, within PP_0506at 595.681 kb on + strand, within PP_0506at 595.682 kb on - strand, within PP_0506at 595.781 kb on - strand, within PP_0506at 595.781 kb on - strand, within PP_0506at 595.781 kb on - strand, within PP_0506at 595.786 kb on + strand, within PP_0506at 595.786 kb on + strand, within PP_0506at 595.888 kb on + strand, within PP_0506at 595.888 kb on + strand, within PP_0506at 595.889 kb on - strand, within PP_0506at 595.889 kb on - strand, within PP_0506at 595.889 kb on - strand, within PP_0506at 595.916 kb on + strand, within PP_0506at 595.916 kb on + strand, within PP_0506at 595.917 kb on - strand, within PP_0506at 595.948 kb on + strand, within PP_0506at 595.948 kb on + strand, within PP_0506at 595.949 kb on - strand, within PP_0506at 596.150 kb on - strandat 596.562 kb on - strand, within PP_0507at 596.599 kb on + strand, within PP_0507at 596.599 kb on + strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.602 kb on - strand, within PP_0507at 596.602 kb on - strand, within PP_0507at 597.024 kb on + strand, within PP_0508at 597.025 kb on - strand, within PP_0508at 597.025 kb on - strand, within PP_0508at 597.295 kb on + strand, within PP_0508at 597.327 kb on - strand, within PP_0508at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.679 kb on + strand, within PP_0509

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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595,264 - PP_0506 0.30 -1.5
595,335 + PP_0506 0.35 -1.6
595,335 + PP_0506 0.35 +1.3
595,336 - PP_0506 0.35 -1.0
595,336 - PP_0506 0.35 +0.7
595,501 - PP_0506 0.48 +1.1
595,551 - PP_0506 0.52 -0.2
595,590 + PP_0506 0.55 -0.9
595,605 - PP_0506 0.57 +0.4
595,681 + PP_0506 0.63 -0.1
595,681 + PP_0506 0.63 +0.7
595,681 + PP_0506 0.63 +0.4
595,682 - PP_0506 0.63 +0.6
595,781 - PP_0506 0.71 +0.1
595,781 - PP_0506 0.71 +0.9
595,781 - PP_0506 0.71 +2.2
595,786 + PP_0506 0.71 +0.5
595,786 + PP_0506 0.71 -0.3
595,888 + PP_0506 0.79 +0.3
595,888 + PP_0506 0.79 +0.0
595,889 - PP_0506 0.79 -1.3
595,889 - PP_0506 0.79 -0.3
595,889 - PP_0506 0.79 +0.6
595,916 + PP_0506 0.81 -0.8
595,916 + PP_0506 0.81 -0.8
595,917 - PP_0506 0.81 -0.5
595,948 + PP_0506 0.84 +0.1
595,948 + PP_0506 0.84 -0.3
595,949 - PP_0506 0.84 -0.8
596,150 - +0.4
596,562 - PP_0507 0.58 -0.4
596,599 + PP_0507 0.63 +0.7
596,599 + PP_0507 0.63 +0.5
596,600 - PP_0507 0.63 +1.4
596,600 - PP_0507 0.63 +1.5
596,600 - PP_0507 0.63 -0.1
596,600 - PP_0507 0.63 -0.4
596,600 - PP_0507 0.63 -0.5
596,601 + PP_0507 0.63 -0.1
596,601 + PP_0507 0.63 -0.8
596,601 + PP_0507 0.63 +0.3
596,601 + PP_0507 0.63 -1.0
596,602 - PP_0507 0.63 +1.0
596,602 - PP_0507 0.63 -0.5
597,024 + PP_0508 0.27 +0.8
597,025 - PP_0508 0.28 -3.1
597,025 - PP_0508 0.28 +1.4
597,295 + PP_0508 0.74 -0.1
597,327 - PP_0508 0.80 +0.1
597,630 - PP_0509 0.16 +0.8
597,630 - PP_0509 0.16 -0.6
597,630 - PP_0509 0.16 +1.6
597,630 - PP_0509 0.16 -0.1
597,679 + PP_0509 0.30 +0.7

Or see this region's nucleotide sequence