Strain Fitness in Pseudomonas putida KT2440 around PP_5405

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
6,162,284	-		PP_5404	0.27	-0.7
6,162,284	-		PP_5404	0.27	+0.9
6,162,298	+		PP_5404	0.28	-0.4
6,162,298	+		PP_5404	0.28	-0.8
6,162,298	+		PP_5404	0.28	-0.2
6,162,298	+		PP_5404	0.28	+0.4
6,162,301	-		PP_5404	0.28	+0.4
6,162,301	-		PP_5404	0.28	+0.4
6,162,301	-		PP_5404	0.28	+0.3
6,162,360	+		PP_5404	0.32	-0.7
6,162,360	+		PP_5404	0.32	-0.5
6,162,360	+		PP_5404	0.32	+0.6
6,162,361	-		PP_5404	0.32	-0.9
6,162,361	-		PP_5404	0.32	+0.2
6,162,361	-		PP_5404	0.32	+0.3
6,162,361	-		PP_5404	0.32	+0.1
6,162,361	-		PP_5404	0.32	-0.3
6,162,361	-		PP_5404	0.32	+0.6
6,162,380	+		PP_5404	0.34	+0.1
6,162,380	+		PP_5404	0.34	+0.5
6,162,381	-		PP_5404	0.34	-0.4
6,162,398	-		PP_5404	0.35	-0.3
6,162,415	-		PP_5404	0.36	+1.9
6,162,451	+		PP_5404	0.39	-0.2
6,162,451	+		PP_5404	0.39	+1.0
6,162,482	+		PP_5404	0.41	-0.2
6,162,482	+		PP_5404	0.41	+0.5
6,162,482	+		PP_5404	0.41	-1.2
6,162,482	+		PP_5404	0.41	+0.8
6,162,482	+		PP_5404	0.41	-0.4
6,162,483	-		PP_5404	0.41	+1.3
6,162,486	+		PP_5404	0.41	+0.2
6,162,486	+		PP_5404	0.41	+0.0
6,162,487	-		PP_5404	0.42	+0.3
6,162,487	-		PP_5404	0.42	-0.1
6,162,487	-		PP_5404	0.42	-0.3
6,162,487	-		PP_5404	0.42	-0.9
6,162,528	-		PP_5404	0.45	-0.7
6,162,528	-		PP_5404	0.45	+0.7
6,162,596	-		PP_5404	0.50	-0.3
6,162,597	+		PP_5404	0.50	+0.4
6,162,597	+		PP_5404	0.50	+0.1
6,162,597	+		PP_5404	0.50	-0.6
6,162,597	+		PP_5404	0.50	+0.3
6,162,597	+		PP_5404	0.50	+0.2
6,162,597	+		PP_5404	0.50	+0.9
6,162,597	+		PP_5404	0.50	+0.3
6,162,598	-		PP_5404	0.50	+0.4
6,162,598	-		PP_5404	0.50	-0.7
6,162,598	-		PP_5404	0.50	-0.1
6,162,598	-		PP_5404	0.50	+0.8
6,162,598	-		PP_5404	0.50	+2.5
6,162,647	+		PP_5404	0.53	+0.3
6,162,647	+		PP_5404	0.53	-0.3
6,162,648	-		PP_5404	0.54	+0.9
6,162,648	-		PP_5404	0.54	+0.8
6,162,648	-		PP_5404	0.54	-0.6
6,162,713	+		PP_5404	0.58	-0.5
6,162,769	+		PP_5404	0.63	-0.9
6,162,769	+		PP_5404	0.63	-2.2
6,162,769	+		PP_5404	0.63	-1.1
6,162,770	-		PP_5404	0.63	+0.1
6,162,770	-		PP_5404	0.63	-0.1
6,162,810	-		PP_5404	0.66	-0.1
6,162,813	-		PP_5404	0.66	+0.0
6,162,823	+		PP_5404	0.67	+0.4
6,162,853	-		PP_5404	0.69	-0.0
6,162,853	-		PP_5404	0.69	+0.8
6,162,859	+		PP_5404	0.69	-0.2
6,162,859	+		PP_5404	0.69	-0.4
6,162,860	-		PP_5404	0.69	-1.8
6,162,872	+		PP_5404	0.70	+0.1
6,162,872	+		PP_5404	0.70	-0.2
6,162,872	+		PP_5404	0.70	-0.5
6,162,872	+		PP_5404	0.70	-0.3
6,162,872	+		PP_5404	0.70	+0.2
6,162,873	-		PP_5404	0.70	+0.0
6,162,873	-		PP_5404	0.70	+0.8
6,162,873	-		PP_5404	0.70	-2.4
6,162,873	-		PP_5404	0.70	-1.0
6,162,905	+		PP_5404	0.73	-0.2
6,162,906	-		PP_5404	0.73	+0.5
6,162,965	+		PP_5404	0.77	+0.3
6,162,965	+		PP_5404	0.77	+0.6
6,162,966	-		PP_5404	0.77	-1.0
6,162,966	-		PP_5404	0.77	+0.7
6,163,027	-		PP_5404	0.82	-0.0
6,163,066	-		PP_5404	0.85	+0.5
6,163,066	-		PP_5404	0.85	-0.7
6,163,076	+		PP_5404	0.85	+0.4
6,163,119	+		PP_5404	0.88	-0.3
6,163,119	+		PP_5404	0.88	-0.1
6,163,120	-		PP_5404	0.89	+0.2
6,163,120	-		PP_5404	0.89	-0.1
6,163,146	-				+0.5
6,163,146	-				-0.3
6,163,146	-				-0.1
6,163,187	+				+0.2
6,163,237	+				-0.1
6,163,237	+				+3.2
6,163,237	+				-0.9
6,163,238	-				+1.9
6,163,238	-				+0.6
6,163,279	-				+0.0
6,163,471	-				+0.7
6,163,538	-		PP_5405	0.13	+0.2
6,163,609	-		PP_5405	0.17	-1.0
6,163,723	+		PP_5405	0.23	+0.6
6,163,788	+		PP_5405	0.26	+0.1
6,163,789	-		PP_5405	0.26	-0.5
6,163,802	+		PP_5405	0.26	-0.3
6,163,802	+		PP_5405	0.26	+0.6
6,163,802	+		PP_5405	0.26	-0.4
6,163,803	-		PP_5405	0.26	+0.4
6,163,803	-		PP_5405	0.26	+0.3
6,163,819	-		PP_5405	0.27	+1.1
6,163,824	+		PP_5405	0.28	-0.5
6,163,824	+		PP_5405	0.28	+0.0
6,163,824	+		PP_5405	0.28	-0.3
6,163,824	+		PP_5405	0.28	-0.4
6,163,825	-		PP_5405	0.28	-0.5
6,163,854	+		PP_5405	0.29	-0.2
6,163,854	+		PP_5405	0.29	+0.4
6,163,875	+		PP_5405	0.30	+0.7
6,163,876	-		PP_5405	0.30	-0.1
6,163,876	-		PP_5405	0.30	-0.6
6,163,876	-		PP_5405	0.30	+1.1
6,163,876	-		PP_5405	0.30	-1.1
6,163,935	+		PP_5405	0.33	-0.1
6,163,998	+		PP_5405	0.36	+0.2
6,163,998	+		PP_5405	0.36	-1.6
6,163,999	-		PP_5405	0.36	+0.4
6,164,018	+		PP_5405	0.37	+1.1
6,164,073	-		PP_5405	0.40	-1.6
6,164,104	-		PP_5405	0.41	+1.2
6,164,348	+		PP_5405	0.54	-0.3
6,164,384	-		PP_5405	0.55	+1.5
6,164,493	+		PP_5405	0.61	+0.3
6,164,494	-		PP_5405	0.61	+3.0
6,164,564	+		PP_5405	0.64	-0.8
6,164,564	+		PP_5405	0.64	-0.7
6,164,565	-		PP_5405	0.64	+0.9
6,164,565	-		PP_5405	0.64	-0.6
6,164,565	-		PP_5405	0.64	+0.8
6,164,589	+		PP_5405	0.66	+1.2
6,164,589	+		PP_5405	0.66	+0.4
6,164,603	+		PP_5405	0.66	+0.7
6,164,603	+		PP_5405	0.66	+0.5
6,164,635	-		PP_5405	0.68	+0.2
6,164,653	+		PP_5405	0.69	+1.0
6,164,733	+		PP_5405	0.73	+1.3
6,164,733	+		PP_5405	0.73	+0.7
6,164,733	+		PP_5405	0.73	+0.2
6,164,733	+		PP_5405	0.73	+0.0
6,164,733	+		PP_5405	0.73	-0.3
6,164,766	+		PP_5405	0.74	+0.8
6,164,796	+		PP_5405	0.76	+1.3
6,164,797	-		PP_5405	0.76	-0.1
6,164,797	-		PP_5405	0.76	+0.4
6,164,797	-		PP_5405	0.76	-0.6
6,164,797	-		PP_5405	0.76	+0.1
6,164,797	-		PP_5405	0.76	+0.1
6,164,797	-		PP_5405	0.76	+0.0
6,164,816	+		PP_5405	0.77	-0.1
6,164,816	+		PP_5405	0.77	+4.9
6,164,817	-		PP_5405	0.77	+3.0
6,164,817	-		PP_5405	0.77	-0.8
6,164,817	-		PP_5405	0.77	+1.1
6,164,817	-		PP_5405	0.77	-0.2
6,164,817	-		PP_5405	0.77	-0.4
6,164,817	-		PP_5405	0.77	+0.2
6,164,817	-		PP_5405	0.77	-0.6
6,164,817	-		PP_5405	0.77	+0.5
6,164,817	-		PP_5405	0.77	+1.1
6,164,822	+		PP_5405	0.77	-0.6
6,164,823	-		PP_5405	0.77	+0.0
6,164,823	-		PP_5405	0.77	+0.9
6,164,823	-		PP_5405	0.77	+1.0
6,164,883	+		PP_5405	0.80	-0.2
6,164,883	+		PP_5405	0.80	+0.3
6,164,883	+		PP_5405	0.80	+1.2
6,164,884	-		PP_5405	0.80	-0.4
6,164,888	-		PP_5405	0.80	+2.0
6,164,979	-		PP_5405	0.85	+2.0
6,165,042	+		PP_5405	0.88	-0.7
6,165,043	-		PP_5405	0.88	+0.4
6,165,043	-		PP_5405	0.88	-0.6
6,165,043	-		PP_5405	0.88	+0.2
6,165,043	-		PP_5405	0.88	-1.5
6,165,211	+				-1.2
6,165,211	+				+1.3
6,165,212	-				-0.3
6,165,212	-				-0.5
6,165,218	+				+0.2
6,165,218	+				+0.4
6,165,219	-				-0.7
6,165,219	-				+0.3
6,165,220	+				+0.2
6,165,220	+				+0.7
6,165,220	+				+1.5
6,165,220	+				+0.7
6,165,220	+				+0.5
6,165,220	+				+0.0
6,165,220	+				-0.3
6,165,220	+				+1.5
6,165,220	+				-0.1
6,165,220	+				-0.4
6,165,220	+				-0.1
6,165,220	+				+0.9
6,165,220	+				-0.8
6,165,220	+				+1.3
6,165,221	-				-0.9
6,165,221	-				+0.6
6,165,221	-				+1.1
6,165,221	-				-0.5
6,165,221	-				+0.8
6,165,221	-				-0.5
6,165,221	-				-1.3
6,165,221	-				+0.9
6,165,221	-				-0.0
6,165,221	-				+2.7
6,165,221	-				-0.2
6,165,221	-				-0.4
6,165,221	-				-0.5
6,165,241	-				-0.5
6,165,362	+				-0.6
6,165,362	+				+0.3
6,165,363	-				+0.5
6,165,409	+		PP_5406	0.13	-0.6
6,165,409	+		PP_5406	0.13	+0.3
6,165,410	-		PP_5406	0.14	-1.0
6,165,420	+		PP_5406	0.15	+0.2
6,165,421	-		PP_5406	0.15	+0.3
6,165,454	+		PP_5406	0.18	-1.6
6,165,455	-		PP_5406	0.18	-0.8
6,165,469	+		PP_5406	0.20	-0.2
6,165,470	-		PP_5406	0.20	-0.9
6,165,564	-		PP_5406	0.30	+0.5
6,165,579	+		PP_5406	0.31	-0.4
6,165,579	+		PP_5406	0.31	+0.3
6,165,593	+		PP_5406	0.33	+0.7
6,165,594	-		PP_5406	0.33	-0.0
6,165,594	-		PP_5406	0.33	-0.8
6,165,625	-		PP_5406	0.36	-0.3
6,165,625	-		PP_5406	0.36	+2.0
6,165,649	+		PP_5406	0.38	+0.7
6,165,649	+		PP_5406	0.38	+0.9
6,165,649	+		PP_5406	0.38	-1.1
6,165,649	+		PP_5406	0.38	+0.9
6,165,649	+		PP_5406	0.38	+1.9
6,165,650	-		PP_5406	0.39	-0.5
6,165,650	-		PP_5406	0.39	+0.2
6,165,652	+		PP_5406	0.39	-0.1
6,165,728	+		PP_5406	0.47	+2.3
6,165,728	+		PP_5406	0.47	-1.7
6,165,728	+				-0.5
6,165,729	-		PP_5406	0.47	-0.6
6,165,838	+		PP_5406	0.58	-0.4
6,166,039	+		PP_5406	0.79	+1.2
6,166,040	-		PP_5406	0.79	+0.8
6,166,040	-		PP_5406	0.79	-0.2
6,166,047	+		PP_5406	0.80	-0.5
6,166,047	+		PP_5406	0.80	+0.4
6,166,048	-		PP_5406	0.80	-0.3
6,166,048	-		PP_5406	0.80	-0.4
6,166,048	-		PP_5406	0.80	-0.4
6,166,110	-		PP_5406	0.86	+0.7
6,166,110	-		PP_5406	0.86	-0.1
6,166,110	-		PP_5406	0.86	+0.6
6,166,122	+		PP_5406	0.88	+1.0
6,166,122	+		PP_5406	0.88	-0.5
6,166,122	+		PP_5406	0.88	-0.7
6,166,123	-		PP_5406	0.88	-0.1
6,166,136	+		PP_5406	0.89	+2.1
6,166,136	+		PP_5406	0.89	+1.3
6,166,136	+		PP_5406	0.89	-0.7
6,166,136	+		PP_5406	0.89	-0.7
6,166,137	-		PP_5406	0.89	-0.6
6,166,137	-		PP_5406	0.89	+0.4
6,166,137	-		PP_5406	0.89	+0.6
6,166,137	-		PP_5406	0.89	-0.2
6,166,170	+				+0.3
6,166,170	+				-1.1
6,166,170	+				+0.1
6,166,170	+				+1.6
6,166,170	+				-0.7
6,166,170	+				-0.4
6,166,170	+				-0.6
6,166,170	+				+0.0
6,166,171	-				+0.2
6,166,171	-				+0.5
6,166,171	-				-0.6
6,166,171	-				-0.6
6,166,171	-				+0.1
6,166,171	-				+0.1
6,166,171	-				-0.2
6,166,174	+				+0.4
6,166,174	+				-0.2
6,166,174	+				-1.2
6,166,174	+				+1.2
6,166,174	+				+0.9
6,166,174	+				-0.0
6,166,174	+				+1.6
6,166,174	+				+1.5
6,166,175	-				+0.2
6,166,175	-				+0.1
6,166,175	-				+0.5
6,166,175	-				+0.0
6,166,175	-				-1.0
6,166,175	-				+2.1
6,166,175	-				-0.1
6,166,175	-				+1.0
6,166,175	-				+0.1
6,166,175	-				+0.2
6,166,175	-				-2.2
6,166,175	-				-1.4
6,166,175	-				+0.3
6,166,175	-				+0.8
6,166,175	-				+0.7
6,166,175	-				+1.7
6,166,262	-				-0.1