Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4542 and PP_4543 are separated by 105 nucleotides PP_4543 and PP_4544 are separated by 178 nucleotides
PP_4542: PP_4542 - putative ABC transporter, ATP-binding protein/permease protein, at 5,157,905 to 5,159,737
_4542
PP_4543: PP_4543 - conserved protein of unknown function, at 5,159,843 to 5,161,054
_4543
PP_4544: PP_4544 - conserved exported protein of unknown function, at 5,161,233 to 5,162,477
_4544
Position (kb) 5159
5160
5161
5162 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5159.015 kb on + strand, within PP_4542 at 5159.037 kb on + strand, within PP_4542 at 5159.037 kb on + strand, within PP_4542 at 5159.037 kb on + strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.038 kb on - strand, within PP_4542 at 5159.138 kb on + strand, within PP_4542 at 5159.138 kb on + strand, within PP_4542 at 5159.138 kb on + strand, within PP_4542 at 5159.236 kb on + strand, within PP_4542 at 5159.237 kb on - strand, within PP_4542 at 5159.276 kb on + strand, within PP_4542 at 5159.687 kb on + strand at 5159.687 kb on + strand at 5159.688 kb on - strand at 5159.688 kb on - strand at 5159.774 kb on - strand at 5159.794 kb on + strand at 5159.795 kb on - strand at 5159.795 kb on - strand at 5159.807 kb on - strand at 5159.887 kb on - strand at 5159.958 kb on + strand at 5159.959 kb on - strand at 5159.959 kb on - strand at 5159.959 kb on - strand at 5159.959 kb on - strand at 5159.996 kb on + strand, within PP_4543 at 5160.282 kb on + strand, within PP_4543 at 5160.282 kb on + strand, within PP_4543 at 5160.283 kb on - strand, within PP_4543 at 5160.283 kb on - strand, within PP_4543 at 5160.294 kb on + strand, within PP_4543 at 5160.294 kb on + strand, within PP_4543 at 5160.294 kb on + strand, within PP_4543 at 5160.294 kb on + strand, within PP_4543 at 5160.295 kb on - strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.299 kb on + strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.300 kb on - strand, within PP_4543 at 5160.580 kb on - strand, within PP_4543 at 5160.580 kb on - strand, within PP_4543 at 5160.685 kb on - strand, within PP_4543 at 5160.738 kb on + strand, within PP_4543 at 5160.738 kb on + strand, within PP_4543 at 5160.739 kb on - strand, within PP_4543 at 5160.739 kb on - strand, within PP_4543 at 5160.739 kb on - strand, within PP_4543 at 5160.739 kb on - strand at 5160.739 kb on - strand, within PP_4543 at 5160.785 kb on + strand, within PP_4543 at 5160.786 kb on - strand, within PP_4543 at 5161.001 kb on + strand at 5161.002 kb on - strand at 5161.055 kb on + strand at 5161.055 kb on + strand at 5161.055 kb on + strand at 5161.056 kb on - strand at 5161.063 kb on + strand at 5161.063 kb on + strand at 5161.064 kb on - strand at 5161.068 kb on - strand at 5161.082 kb on + strand at 5161.082 kb on + strand at 5161.093 kb on + strand at 5161.093 kb on + strand at 5161.094 kb on - strand at 5161.094 kb on - strand at 5161.094 kb on - strand at 5161.117 kb on - strand at 5161.141 kb on + strand at 5161.152 kb on + strand at 5161.232 kb on + strand at 5161.232 kb on + strand at 5161.233 kb on - strand at 5161.233 kb on - strand at 5161.233 kb on - strand at 5161.233 kb on - strand at 5161.233 kb on - strand at 5161.253 kb on + strand at 5161.261 kb on + strand at 5161.261 kb on + strand at 5161.368 kb on + strand, within PP_4544 at 5161.509 kb on + strand, within PP_4544 at 5161.570 kb on + strand, within PP_4544 at 5161.571 kb on - strand, within PP_4544 at 5161.590 kb on + strand, within PP_4544 at 5161.591 kb on - strand, within PP_4544 at 5161.591 kb on - strand, within PP_4544 at 5161.591 kb on - strand at 5161.683 kb on + strand, within PP_4544 at 5161.683 kb on + strand, within PP_4544 at 5161.683 kb on + strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.719 kb on + strand, within PP_4544 at 5161.719 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.896 kb on + strand, within PP_4544 at 5161.897 kb on - strand, within PP_4544 at 5161.897 kb on - strand, within PP_4544 at 5161.935 kb on + strand, within PP_4544 at 5161.936 kb on - strand, within PP_4544 at 5161.936 kb on - strand, within PP_4544 at 5161.957 kb on - strand, within PP_4544 at 5161.957 kb on - strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,159,015 + PP_4542 0.61 +0.3 5,159,037 + PP_4542 0.62 -0.4 5,159,037 + PP_4542 0.62 +0.1 5,159,037 + PP_4542 0.62 +0.1 5,159,038 - PP_4542 0.62 +0.8 5,159,038 - PP_4542 0.62 +0.0 5,159,038 - PP_4542 0.62 -0.2 5,159,038 - PP_4542 0.62 +0.7 5,159,038 - PP_4542 0.62 -0.5 5,159,038 - PP_4542 0.62 -0.0 5,159,038 - PP_4542 0.62 -0.4 5,159,038 - PP_4542 0.62 +0.4 5,159,138 + PP_4542 0.67 -0.6 5,159,138 + PP_4542 0.67 +1.0 5,159,138 + PP_4542 0.67 -1.0 5,159,236 + PP_4542 0.73 +0.2 5,159,237 - PP_4542 0.73 +1.1 5,159,276 + PP_4542 0.75 -0.1 5,159,687 + +0.9 5,159,687 + -0.7 5,159,688 - -0.9 5,159,688 - -0.2 5,159,774 - -0.2 5,159,794 + -0.1 5,159,795 - -0.5 5,159,795 - +0.0 5,159,807 - -1.4 5,159,887 - -0.9 5,159,958 + +0.5 5,159,959 - -0.4 5,159,959 - -1.5 5,159,959 - +0.4 5,159,959 - -0.5 5,159,996 + PP_4543 0.13 -0.4 5,160,282 + PP_4543 0.36 +0.5 5,160,282 + PP_4543 0.36 -0.2 5,160,283 - PP_4543 0.36 -0.0 5,160,283 - PP_4543 0.36 -0.2 5,160,294 + PP_4543 0.37 +0.7 5,160,294 + PP_4543 0.37 +0.2 5,160,294 + PP_4543 0.37 -0.7 5,160,294 + PP_4543 0.37 +1.3 5,160,295 - PP_4543 0.37 -1.2 5,160,299 + PP_4543 0.38 +8.1 5,160,299 + PP_4543 0.38 +0.9 5,160,299 + PP_4543 0.38 +0.4 5,160,299 + PP_4543 0.38 -1.0 5,160,299 + PP_4543 0.38 +1.9 5,160,299 + PP_4543 0.38 +0.4 5,160,299 + PP_4543 0.38 -0.1 5,160,299 + PP_4543 0.38 -1.3 5,160,300 - PP_4543 0.38 +0.8 5,160,300 - PP_4543 0.38 -0.9 5,160,300 - PP_4543 0.38 -0.8 5,160,300 - PP_4543 0.38 -0.4 5,160,300 - PP_4543 0.38 -0.1 5,160,300 - PP_4543 0.38 -0.1 5,160,300 - PP_4543 0.38 +0.4 5,160,300 - PP_4543 0.38 +0.2 5,160,300 - PP_4543 0.38 +1.0 5,160,580 - PP_4543 0.61 +1.2 5,160,580 - PP_4543 0.61 +0.4 5,160,685 - PP_4543 0.69 +0.2 5,160,738 + PP_4543 0.74 -0.6 5,160,738 + PP_4543 0.74 +1.0 5,160,739 - PP_4543 0.74 +0.0 5,160,739 - PP_4543 0.74 +0.1 5,160,739 - PP_4543 0.74 -0.2 5,160,739 - -0.9 5,160,739 - PP_4543 0.74 -0.3 5,160,785 + PP_4543 0.78 +0.8 5,160,786 - PP_4543 0.78 +1.4 5,161,001 + +0.5 5,161,002 - +0.4 5,161,055 + -0.5 5,161,055 + -0.1 5,161,055 + -0.8 5,161,056 - -1.4 5,161,063 + +0.4 5,161,063 + +0.1 5,161,064 - -2.2 5,161,068 - -1.3 5,161,082 + +0.0 5,161,082 + -0.2 5,161,093 + -1.4 5,161,093 + -0.4 5,161,094 - +0.6 5,161,094 - -1.8 5,161,094 - -1.7 5,161,117 - -0.5 5,161,141 + -0.1 5,161,152 + -0.9 5,161,232 + -0.9 5,161,232 + +0.3 5,161,233 - +0.8 5,161,233 - +1.0 5,161,233 - -0.5 5,161,233 - +0.7 5,161,233 - +1.6 5,161,253 + -0.1 5,161,261 + -1.0 5,161,261 + +0.4 5,161,368 + PP_4544 0.11 +0.6 5,161,509 + PP_4544 0.22 +0.7 5,161,570 + PP_4544 0.27 +1.4 5,161,571 - PP_4544 0.27 +0.8 5,161,590 + PP_4544 0.29 +0.5 5,161,591 - PP_4544 0.29 -0.9 5,161,591 - PP_4544 0.29 -0.3 5,161,591 - +0.4 5,161,683 + PP_4544 0.36 +0.0 5,161,683 + PP_4544 0.36 +0.4 5,161,683 + PP_4544 0.36 -1.9 5,161,684 - PP_4544 0.36 +1.0 5,161,684 - PP_4544 0.36 -0.2 5,161,684 - PP_4544 0.36 -0.1 5,161,719 + PP_4544 0.39 -0.0 5,161,719 + PP_4544 0.39 +0.2 5,161,848 + PP_4544 0.49 +0.8 5,161,848 + PP_4544 0.49 -1.3 5,161,848 + PP_4544 0.49 -0.6 5,161,848 + PP_4544 0.49 -0.1 5,161,849 - PP_4544 0.49 +0.2 5,161,849 - PP_4544 0.49 +0.0 5,161,849 - PP_4544 0.49 +0.4 5,161,896 + PP_4544 0.53 +2.6 5,161,897 - PP_4544 0.53 -1.2 5,161,897 - PP_4544 0.53 +0.7 5,161,935 + PP_4544 0.56 +0.8 5,161,936 - PP_4544 0.56 +0.0 5,161,936 - PP_4544 0.56 -0.3 5,161,957 - PP_4544 0.58 -0.0 5,161,957 - PP_4544 0.58 -0.6 5,162,025 + PP_4544 0.64 +0.7 5,162,025 + PP_4544 0.64 +0.3 5,162,025 + PP_4544 0.64 +0.9 5,162,025 + PP_4544 0.64 -0.1 5,162,025 + PP_4544 0.64 -1.1 5,162,025 + PP_4544 0.64 -0.3 5,162,025 + PP_4544 0.64 -0.5 5,162,026 - PP_4544 0.64 -0.2 5,162,026 - PP_4544 0.64 -1.5 5,162,026 - PP_4544 0.64 +1.1 5,162,026 - PP_4544 0.64 -0.3 5,162,026 - PP_4544 0.64 -0.3 5,162,026 - PP_4544 0.64 -1.0 5,162,026 - PP_4544 0.64 +0.6 5,162,026 - PP_4544 0.64 -0.6 5,162,026 - PP_4544 0.64 -0.0
Or see this region's nucleotide sequence