Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4468 and PP_t58 are separated by 319 nucleotides PP_t58 and PP_t57 are separated by 134 nucleotides PP_t57 and PP_4469 are separated by 110 nucleotides PP_4469 and PP_5693 overlap by 1 nucleotides PP_5693 and PP_4470 are separated by 69 nucleotides PP_4470 and PP_4471 are separated by 107 nucleotides
PP_4468: PP_4468 - Transcriptional regulator, Cro/CI family, at 5,074,745 to 5,075,236
_4468
PP_t58: PP_t58 - tRNA-Arg, at 5,075,556 to 5,075,627
_t58
PP_t57: PP_t57 - tRNA-Arg, at 5,075,762 to 5,075,830
_t57
PP_4469: PP_4469 - ribose 1,5-bisphosphate phosphokinase, at 5,075,941 to 5,076,540
_4469
PP_5693: PP_5693 - conserved protein of unknown function, at 5,076,540 to 5,076,809
_5693
PP_4470: PP_4470 - putative transcriptional regulator (Arc domain-containing), at 5,076,879 to 5,077,205
_4470
PP_4471: PP_4471 - Magnesium transporter, at 5,077,313 to 5,078,755
_4471
Position (kb) 5075
5076
5077 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5074.983 kb on + strand, within PP_4468 at 5074.983 kb on + strand, within PP_4468 at 5075.037 kb on + strand, within PP_4468 at 5075.037 kb on + strand, within PP_4468 at 5075.038 kb on - strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.068 kb on - strand, within PP_4468 at 5075.068 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.140 kb on + strand, within PP_4468 at 5075.140 kb on + strand, within PP_4468 at 5075.176 kb on - strand, within PP_4468 at 5075.234 kb on + strand at 5075.234 kb on + strand at 5075.264 kb on + strand at 5075.264 kb on + strand at 5075.264 kb on + strand at 5075.265 kb on - strand at 5075.346 kb on + strand at 5075.347 kb on - strand at 5075.347 kb on - strand at 5075.347 kb on - strand at 5075.364 kb on - strand at 5075.395 kb on + strand at 5075.395 kb on + strand at 5075.395 kb on + strand at 5075.396 kb on - strand at 5075.396 kb on - strand at 5075.404 kb on + strand at 5075.404 kb on + strand at 5075.405 kb on - strand at 5075.405 kb on - strand at 5075.405 kb on - strand at 5075.434 kb on + strand at 5075.584 kb on + strand, within PP_t58 at 5075.585 kb on - strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.662 kb on + strand at 5075.663 kb on - strand at 5075.663 kb on - strand at 5075.717 kb on + strand at 5075.717 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.740 kb on - strand at 5075.740 kb on - strand at 5075.740 kb on - strand at 5075.747 kb on + strand at 5075.747 kb on + strand at 5075.757 kb on + strand at 5075.758 kb on - strand at 5075.771 kb on + strand, within PP_t57 at 5075.771 kb on + strand, within PP_t57 at 5075.771 kb on + strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.823 kb on - strand, within PP_t57 at 5075.834 kb on - strand at 5075.876 kb on + strand at 5075.877 kb on - strand at 5075.923 kb on + strand at 5075.924 kb on - strand at 5075.953 kb on + strand at 5075.954 kb on - strand at 5075.957 kb on - strand at 5075.957 kb on - strand at 5076.018 kb on + strand, within PP_4469 at 5076.200 kb on + strand, within PP_4469 at 5076.272 kb on + strand, within PP_4469 at 5076.272 kb on + strand, within PP_4469 at 5076.273 kb on - strand, within PP_4469 at 5076.273 kb on - strand, within PP_4469 at 5076.273 kb on - strand, within PP_4469 at 5076.273 kb on - strand, within PP_4469 at 5076.277 kb on + strand, within PP_4469 at 5076.277 kb on + strand, within PP_4469 at 5076.278 kb on - strand, within PP_4469 at 5076.278 kb on - strand, within PP_4469 at 5076.327 kb on + strand, within PP_4469 at 5076.488 kb on - strand at 5076.488 kb on - strand at 5076.534 kb on + strand at 5076.541 kb on + strand at 5076.541 kb on + strand at 5076.542 kb on - strand at 5076.542 kb on - strand at 5076.542 kb on - strand at 5076.548 kb on + strand at 5076.548 kb on + strand at 5076.548 kb on + strand at 5076.549 kb on - strand at 5076.549 kb on - strand at 5076.551 kb on - strand at 5076.636 kb on + strand, within PP_5693 at 5076.705 kb on - strand, within PP_5693 at 5076.716 kb on + strand, within PP_5693 at 5076.717 kb on - strand, within PP_5693 at 5076.727 kb on + strand, within PP_5693 at 5076.728 kb on - strand, within PP_5693 at 5076.728 kb on - strand, within PP_5693 at 5076.728 kb on - strand, within PP_5693 at 5076.728 kb on - strand, within PP_5693 at 5076.815 kb on + strand at 5076.816 kb on - strand at 5076.877 kb on - strand at 5076.877 kb on - strand at 5076.899 kb on + strand at 5076.903 kb on + strand at 5076.904 kb on - strand at 5076.974 kb on - strand, within PP_4470 at 5077.035 kb on - strand, within PP_4470 at 5077.035 kb on - strand, within PP_4470 at 5077.235 kb on + strand at 5077.235 kb on + strand at 5077.235 kb on + strand at 5077.236 kb on - strand at 5077.236 kb on - strand at 5077.236 kb on - strand at 5077.314 kb on + strand at 5077.314 kb on + strand at 5077.314 kb on + strand at 5077.315 kb on - strand at 5077.463 kb on + strand, within PP_4471 at 5077.518 kb on + strand, within PP_4471 at 5077.518 kb on + strand, within PP_4471 at 5077.518 kb on + strand at 5077.519 kb on - strand, within PP_4471 at 5077.519 kb on - strand, within PP_4471
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,074,983 + PP_4468 0.48 -0.3 5,074,983 + PP_4468 0.48 +0.1 5,075,037 + PP_4468 0.59 +0.1 5,075,037 + PP_4468 0.59 +0.7 5,075,038 - PP_4468 0.60 +0.1 5,075,067 + PP_4468 0.65 -0.9 5,075,067 + -0.6 5,075,067 + PP_4468 0.65 +1.0 5,075,067 + PP_4468 0.65 -0.8 5,075,067 + PP_4468 0.65 -0.2 5,075,068 - PP_4468 0.66 +0.0 5,075,068 - PP_4468 0.66 -0.3 5,075,099 - PP_4468 0.72 +0.2 5,075,099 - PP_4468 0.72 -1.9 5,075,099 - PP_4468 0.72 -0.2 5,075,109 + PP_4468 0.74 +0.4 5,075,109 + PP_4468 0.74 +0.5 5,075,109 + PP_4468 0.74 +0.1 5,075,109 + PP_4468 0.74 -0.2 5,075,109 + PP_4468 0.74 -0.9 5,075,109 + PP_4468 0.74 -0.2 5,075,110 - PP_4468 0.74 +1.7 5,075,110 - +0.4 5,075,110 - PP_4468 0.74 -0.0 5,075,110 - PP_4468 0.74 -0.8 5,075,110 - PP_4468 0.74 +0.1 5,075,140 + PP_4468 0.80 +1.4 5,075,140 + PP_4468 0.80 -2.0 5,075,176 - PP_4468 0.88 -0.2 5,075,234 + -1.0 5,075,234 + -0.8 5,075,264 + -0.4 5,075,264 + -0.0 5,075,264 + +1.4 5,075,265 - +2.4 5,075,346 + +0.2 5,075,347 - +0.5 5,075,347 - -0.4 5,075,347 - +0.5 5,075,364 - -0.2 5,075,395 + +0.7 5,075,395 + +0.4 5,075,395 + +0.1 5,075,396 - -0.2 5,075,396 - +0.5 5,075,404 + +0.0 5,075,404 + +0.7 5,075,405 - +0.5 5,075,405 - -0.1 5,075,405 - +1.3 5,075,434 + +0.1 5,075,584 + PP_t58 0.39 -0.2 5,075,585 - PP_t58 0.40 -0.2 5,075,619 + PP_t58 0.88 -0.2 5,075,619 + PP_t58 0.88 +0.4 5,075,619 + PP_t58 0.88 -1.2 5,075,662 + +1.4 5,075,663 - +2.5 5,075,663 - -0.5 5,075,717 + -0.2 5,075,717 + -2.5 5,075,739 + -0.2 5,075,739 + -1.6 5,075,739 + +1.0 5,075,739 + -0.0 5,075,739 + +0.4 5,075,739 + -3.1 5,075,739 + +1.4 5,075,740 - +0.7 5,075,740 - +0.5 5,075,740 - +0.6 5,075,747 + -0.2 5,075,747 + -1.6 5,075,757 + -2.5 5,075,758 - +1.5 5,075,771 + PP_t57 0.13 -1.0 5,075,771 + PP_t57 0.13 -0.2 5,075,771 + PP_t57 0.13 -2.3 5,075,772 - PP_t57 0.14 +0.2 5,075,772 - PP_t57 0.14 +0.6 5,075,772 - PP_t57 0.14 +0.1 5,075,823 - PP_t57 0.88 +1.7 5,075,834 - -0.2 5,075,876 + -0.8 5,075,877 - -1.3 5,075,923 + -0.6 5,075,924 - -0.3 5,075,953 + -1.0 5,075,954 - +1.0 5,075,957 - +0.4 5,075,957 - -0.7 5,076,018 + PP_4469 0.13 +0.5 5,076,200 + PP_4469 0.43 +1.0 5,076,272 + PP_4469 0.55 +0.1 5,076,272 + PP_4469 0.55 +0.4 5,076,273 - PP_4469 0.55 +2.1 5,076,273 - PP_4469 0.55 -0.2 5,076,273 - PP_4469 0.55 -0.4 5,076,273 - PP_4469 0.55 +0.8 5,076,277 + PP_4469 0.56 +0.3 5,076,277 + PP_4469 0.56 +1.5 5,076,278 - PP_4469 0.56 +0.4 5,076,278 - PP_4469 0.56 +1.1 5,076,327 + PP_4469 0.64 +0.8 5,076,488 - -0.2 5,076,488 - +0.7 5,076,534 + +0.4 5,076,541 + -1.1 5,076,541 + +0.1 5,076,542 - -0.0 5,076,542 - +0.5 5,076,542 - +1.4 5,076,548 + +0.6 5,076,548 + +0.5 5,076,548 + +0.0 5,076,549 - -1.0 5,076,549 - -0.5 5,076,551 - -0.2 5,076,636 + PP_5693 0.36 +0.6 5,076,705 - PP_5693 0.61 -0.2 5,076,716 + PP_5693 0.65 -0.2 5,076,717 - PP_5693 0.66 +0.3 5,076,727 + PP_5693 0.69 +1.0 5,076,728 - PP_5693 0.70 -1.2 5,076,728 - PP_5693 0.70 +1.6 5,076,728 - PP_5693 0.70 +0.3 5,076,728 - PP_5693 0.70 +0.6 5,076,815 + -0.2 5,076,816 - +0.1 5,076,877 - +0.4 5,076,877 - +0.4 5,076,899 + +1.3 5,076,903 + +3.0 5,076,904 - +0.1 5,076,974 - PP_4470 0.29 +0.4 5,077,035 - PP_4470 0.48 +0.1 5,077,035 - PP_4470 0.48 +1.2 5,077,235 + -0.5 5,077,235 + +1.8 5,077,235 + +0.3 5,077,236 - -0.9 5,077,236 - +0.5 5,077,236 - +2.2 5,077,314 + +0.9 5,077,314 + -0.2 5,077,314 + +1.4 5,077,315 - -1.3 5,077,463 + PP_4471 0.10 -0.2 5,077,518 + PP_4471 0.14 +1.4 5,077,518 + PP_4471 0.14 -0.6 5,077,518 + +0.4 5,077,519 - PP_4471 0.14 +1.4 5,077,519 - PP_4471 0.14 +1.4
Or see this region's nucleotide sequence