Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4221 and PP_4222 are separated by 155 nucleotides PP_4222 and PP_4223 are separated by 105 nucleotides
PP_4221: PP_4221 - non-ribosomal peptide synthetase (subunit of ferribactin synthase), at 4,787,315 to 4,793,839
_4221
PP_4222: PP_4222 - putative SyrP protein, at 4,793,995 to 4,794,978
_4222
PP_4223: PP_4223 - diaminobutyrate-2-oxoglutarate transaminase, at 4,795,084 to 4,796,442
_4223
Position (kb) 4793
4794
4795 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 4793.115 kb on + strand, within PP_4221 at 4793.235 kb on + strand at 4793.264 kb on - strand at 4793.290 kb on + strand at 4793.290 kb on + strand at 4793.291 kb on - strand at 4793.291 kb on - strand at 4793.291 kb on - strand at 4793.625 kb on + strand at 4793.626 kb on - strand at 4793.626 kb on - strand at 4793.679 kb on + strand at 4793.679 kb on + strand at 4793.679 kb on + strand at 4793.680 kb on - strand at 4793.852 kb on + strand at 4793.853 kb on - strand at 4794.200 kb on + strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.266 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.422 kb on - strand, within PP_4222 at 4794.479 kb on + strand at 4794.480 kb on - strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.492 kb on - strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.681 kb on - strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.740 kb on + strand, within PP_4222 at 4794.923 kb on - strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4795.096 kb on + strand at 4795.887 kb on - strand, within PP_4223 at 4795.893 kb on - strand, within PP_4223
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,793,115 + PP_4221 0.89 +0.4 4,793,235 + +1.4 4,793,264 - -0.1 4,793,290 + -1.2 4,793,290 + +0.5 4,793,291 - +0.5 4,793,291 - +1.7 4,793,291 - -0.9 4,793,625 + +7.3 4,793,626 - +0.1 4,793,626 - +0.7 4,793,679 + +0.2 4,793,679 + -1.2 4,793,679 + +4.2 4,793,680 - +0.7 4,793,852 + +0.9 4,793,853 - -0.6 4,794,200 + PP_4222 0.21 +0.6 4,794,201 - PP_4222 0.21 -0.3 4,794,201 - PP_4222 0.21 +1.6 4,794,201 - PP_4222 0.21 +0.7 4,794,266 - PP_4222 0.28 -0.1 4,794,305 - PP_4222 0.32 -0.9 4,794,305 - PP_4222 0.32 -0.0 4,794,305 - PP_4222 0.32 +0.2 4,794,410 + PP_4222 0.42 +0.0 4,794,410 + PP_4222 0.42 +0.8 4,794,410 + PP_4222 0.42 +0.6 4,794,422 - PP_4222 0.43 +1.7 4,794,479 + -0.1 4,794,480 - PP_4222 0.49 +0.1 4,794,491 + PP_4222 0.50 +0.6 4,794,491 + PP_4222 0.50 -0.2 4,794,492 - PP_4222 0.51 -0.3 4,794,523 + PP_4222 0.54 +0.8 4,794,523 + PP_4222 0.54 -0.6 4,794,606 - PP_4222 0.62 -1.7 4,794,606 - PP_4222 0.62 +0.2 4,794,606 - PP_4222 0.62 -0.5 4,794,606 - PP_4222 0.62 +0.5 4,794,638 + PP_4222 0.65 +1.4 4,794,638 + PP_4222 0.65 +0.3 4,794,681 - PP_4222 0.70 -0.3 4,794,695 + PP_4222 0.71 +6.7 4,794,695 + PP_4222 0.71 -0.9 4,794,696 - PP_4222 0.71 +0.9 4,794,696 - PP_4222 0.71 +0.6 4,794,740 + PP_4222 0.76 +0.1 4,794,923 - -1.1 4,794,970 + -1.5 4,794,970 + +0.0 4,794,970 + -0.3 4,794,971 - -0.9 4,794,971 - -0.3 4,794,971 - +0.6 4,795,096 + -0.9 4,795,887 - PP_4223 0.59 +0.1 4,795,893 - PP_4223 0.60 +0.7
Or see this region's nucleotide sequence