Strain Fitness in Pseudomonas putida KT2440 around PP_4103

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4101 and PP_4102 are separated by 10 nucleotidesPP_4102 and PP_4103 are separated by 128 nucleotidesPP_4103 and PP_4104 are separated by 180 nucleotidesPP_4104 and PP_4105 are separated by 87 nucleotides PP_4101: PP_4101 - Acetyltransferase, GNAT family, at 4,636,316 to 4,636,759 _4101 PP_4102: PP_4102 - conserved protein of unknown function, at 4,636,770 to 4,637,156 _4102 PP_4103: PP_4103 - Low-affinity inorganic phosphate transporter, at 4,637,285 to 4,638,901 _4103 PP_4104: PP_4104 - Glutathione S-transferase family protein, at 4,639,082 to 4,639,777 _4104 PP_4105: PP_4105 - conserved protein of unknown function, at 4,639,865 to 4,640,362 _4105 Position (kb) 4637 4638 4639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4636.285 kb on + strandat 4636.285 kb on + strandat 4636.286 kb on - strandat 4636.321 kb on + strandat 4636.322 kb on - strandat 4636.322 kb on - strandat 4636.322 kb on - strandat 4636.328 kb on + strandat 4636.328 kb on + strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.336 kb on + strandat 4636.336 kb on + strandat 4636.337 kb on - strandat 4636.352 kb on + strandat 4636.353 kb on - strandat 4636.398 kb on + strand, within PP_4101at 4636.601 kb on + strand, within PP_4101at 4636.601 kb on + strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.678 kb on - strand, within PP_4101at 4636.678 kb on - strand, within PP_4101at 4636.702 kb on + strand, within PP_4101at 4636.751 kb on + strandat 4636.751 kb on + strandat 4636.751 kb on + strandat 4636.752 kb on - strandat 4636.752 kb on - strandat 4636.752 kb on - strandat 4636.780 kb on + strandat 4636.781 kb on - strandat 4636.880 kb on - strand, within PP_4102at 4636.880 kb on - strand, within PP_4102at 4636.925 kb on - strand, within PP_4102at 4637.009 kb on + strand, within PP_4102at 4637.101 kb on - strand, within PP_4102at 4637.101 kb on - strand, within PP_4102at 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.135 kb on - strandat 4637.173 kb on + strandat 4637.174 kb on - strandat 4637.195 kb on + strandat 4637.196 kb on - strandat 4637.196 kb on - strandat 4637.236 kb on - strandat 4637.237 kb on + strandat 4637.316 kb on + strandat 4637.374 kb on - strandat 4637.374 kb on - strandat 4637.412 kb on - strandat 4637.568 kb on + strand, within PP_4103at 4637.568 kb on + strand, within PP_4103at 4637.568 kb on + strand, within PP_4103at 4637.569 kb on - strand, within PP_4103at 4637.569 kb on - strand, within PP_4103at 4637.570 kb on + strand, within PP_4103at 4637.570 kb on + strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.685 kb on + strand, within PP_4103at 4637.686 kb on - strand, within PP_4103at 4637.697 kb on + strand, within PP_4103at 4637.697 kb on + strand, within PP_4103at 4637.698 kb on - strandat 4637.698 kb on - strand, within PP_4103at 4637.909 kb on + strand, within PP_4103at 4637.910 kb on - strand, within PP_4103at 4637.999 kb on + strand, within PP_4103at 4638.000 kb on - strand, within PP_4103at 4638.048 kb on + strand, within PP_4103at 4638.048 kb on + strand, within PP_4103at 4638.155 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.276 kb on + strand, within PP_4103at 4638.277 kb on - strand, within PP_4103at 4638.277 kb on - strand, within PP_4103at 4638.372 kb on - strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.428 kb on + strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.429 kb on - strand, within PP_4103at 4638.542 kb on + strand, within PP_4103at 4638.542 kb on + strand, within PP_4103at 4638.543 kb on - strand, within PP_4103at 4638.544 kb on + strand, within PP_4103at 4638.544 kb on + strand, within PP_4103at 4638.545 kb on - strand, within PP_4103at 4638.571 kb on - strand, within PP_4103at 4638.614 kb on - strand, within PP_4103at 4638.614 kb on - strand, within PP_4103at 4638.614 kb on - strand, within PP_4103at 4638.614 kb on - strand, within PP_4103at 4638.618 kb on + strand, within PP_4103at 4638.619 kb on - strand, within PP_4103at 4638.619 kb on - strand, within PP_4103at 4638.619 kb on - strand, within PP_4103at 4638.659 kb on + strand, within PP_4103at 4638.659 kb on + strand, within PP_4103at 4638.659 kb on + strand, within PP_4103at 4638.660 kb on - strand, within PP_4103at 4638.715 kb on + strand, within PP_4103at 4638.715 kb on + strand, within PP_4103at 4638.715 kb on + strand, within PP_4103at 4638.715 kb on + strand, within PP_4103at 4638.875 kb on + strandat 4638.922 kb on - strandat 4639.070 kb on + strandat 4639.071 kb on - strandat 4639.191 kb on + strand, within PP_4104at 4639.192 kb on - strand, within PP_4104at 4639.192 kb on - strand, within PP_4104at 4639.245 kb on + strand, within PP_4104at 4639.245 kb on + strand, within PP_4104at 4639.246 kb on - strand, within PP_4104at 4639.246 kb on - strand, within PP_4104at 4639.320 kb on + strand, within PP_4104at 4639.320 kb on + strand, within PP_4104at 4639.348 kb on - strand, within PP_4104at 4639.348 kb on - strand, within PP_4104at 4639.491 kb on + strand, within PP_4104at 4639.707 kb on + strand, within PP_4104at 4639.812 kb on + strandat 4639.812 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
remove
4,636,285 + -0.4
4,636,285 + +1.1
4,636,286 - +0.3
4,636,321 + +0.2
4,636,322 - -1.1
4,636,322 - -0.9
4,636,322 - -1.3
4,636,328 + +0.8
4,636,328 + +0.2
4,636,329 - +0.2
4,636,329 - +0.3
4,636,329 - -0.7
4,636,329 - -2.0
4,636,336 + +0.3
4,636,336 + +0.1
4,636,337 - +0.2
4,636,352 + -0.1
4,636,353 - +0.1
4,636,398 + PP_4101 0.18 +0.6
4,636,601 + PP_4101 0.64 -0.5
4,636,601 + PP_4101 0.64 +0.3
4,636,602 - PP_4101 0.64 -3.6
4,636,602 - PP_4101 0.64 -0.8
4,636,602 - PP_4101 0.64 -1.8
4,636,602 - PP_4101 0.64 -2.4
4,636,602 - PP_4101 0.64 +2.9
4,636,678 - PP_4101 0.82 -0.3
4,636,678 - PP_4101 0.82 +0.2
4,636,702 + PP_4101 0.87 -0.5
4,636,751 + +2.5
4,636,751 + -1.2
4,636,751 + +0.9
4,636,752 - +0.8
4,636,752 - -0.3
4,636,752 - -0.3
4,636,780 + -0.4
4,636,781 - -0.5
4,636,880 - PP_4102 0.28 +0.0
4,636,880 - PP_4102 0.28 +0.1
4,636,925 - PP_4102 0.40 +1.0
4,637,009 + PP_4102 0.62 +0.2
4,637,101 - PP_4102 0.86 +0.6
4,637,101 - PP_4102 0.86 -0.8
4,637,134 + +0.3
4,637,134 + +0.2
4,637,134 + +0.3
4,637,134 + -1.0
4,637,135 - -0.3
4,637,173 + -0.3
4,637,174 - -0.4
4,637,195 + +1.4
4,637,196 - +0.4
4,637,196 - -0.8
4,637,236 - -0.1
4,637,237 + -0.4
4,637,316 + +1.3
4,637,374 - -0.7
4,637,374 - -0.4
4,637,412 - +0.2
4,637,568 + PP_4103 0.18 +0.6
4,637,568 + PP_4103 0.18 -0.6
4,637,568 + PP_4103 0.18 -0.5
4,637,569 - PP_4103 0.18 -1.2
4,637,569 - PP_4103 0.18 +0.3
4,637,570 + PP_4103 0.18 +0.2
4,637,570 + PP_4103 0.18 +1.5
4,637,571 - PP_4103 0.18 +0.2
4,637,571 - PP_4103 0.18 -0.8
4,637,571 - PP_4103 0.18 +0.4
4,637,571 - PP_4103 0.18 -1.0
4,637,571 - PP_4103 0.18 -0.9
4,637,571 - PP_4103 0.18 -0.2
4,637,571 - PP_4103 0.18 +0.5
4,637,685 + PP_4103 0.25 -0.8
4,637,686 - PP_4103 0.25 -1.0
4,637,697 + PP_4103 0.25 +0.1
4,637,697 + PP_4103 0.25 +0.1
4,637,698 - +2.9
4,637,698 - PP_4103 0.26 -0.3
4,637,909 + PP_4103 0.39 -0.6
4,637,910 - PP_4103 0.39 -0.3
4,637,999 + PP_4103 0.44 +0.1
4,638,000 - PP_4103 0.44 +0.5
4,638,048 + PP_4103 0.47 -0.3
4,638,048 + PP_4103 0.47 +0.5
4,638,155 + PP_4103 0.54 -1.0
4,638,276 + PP_4103 0.61 -0.1
4,638,276 + PP_4103 0.61 -0.4
4,638,276 + PP_4103 0.61 -2.0
4,638,276 + PP_4103 0.61 -1.9
4,638,276 + PP_4103 0.61 -0.9
4,638,276 + PP_4103 0.61 +0.5
4,638,277 - PP_4103 0.61 +0.1
4,638,277 - PP_4103 0.61 +0.3
4,638,372 - PP_4103 0.67 +0.3
4,638,428 + PP_4103 0.71 -0.6
4,638,428 + PP_4103 0.71 -0.0
4,638,428 + PP_4103 0.71 -0.7
4,638,428 + PP_4103 0.71 -0.5
4,638,428 + PP_4103 0.71 -1.2
4,638,428 + PP_4103 0.71 -1.1
4,638,428 + PP_4103 0.71 -0.5
4,638,428 + PP_4103 0.71 +1.1
4,638,429 - PP_4103 0.71 -1.0
4,638,429 - PP_4103 0.71 +0.2
4,638,429 - PP_4103 0.71 -1.0
4,638,429 - PP_4103 0.71 +0.1
4,638,429 - PP_4103 0.71 -0.5
4,638,429 - PP_4103 0.71 -0.7
4,638,429 - PP_4103 0.71 -0.0
4,638,429 - PP_4103 0.71 -0.5
4,638,429 - PP_4103 0.71 -1.9
4,638,429 - PP_4103 0.71 -1.3
4,638,542 + PP_4103 0.78 -1.0
4,638,542 + PP_4103 0.78 +0.6
4,638,543 - PP_4103 0.78 -0.4
4,638,544 + PP_4103 0.78 +0.7
4,638,544 + PP_4103 0.78 -1.0
4,638,545 - PP_4103 0.78 -1.9
4,638,571 - PP_4103 0.80 -1.4
4,638,614 - PP_4103 0.82 -0.2
4,638,614 - PP_4103 0.82 +0.6
4,638,614 - PP_4103 0.82 -1.1
4,638,614 - PP_4103 0.82 -2.1
4,638,618 + PP_4103 0.82 +0.2
4,638,619 - PP_4103 0.82 +0.1
4,638,619 - PP_4103 0.82 -0.6
4,638,619 - PP_4103 0.82 -0.1
4,638,659 + PP_4103 0.85 -2.2
4,638,659 + PP_4103 0.85 -0.2
4,638,659 + PP_4103 0.85 -0.8
4,638,660 - PP_4103 0.85 -0.2
4,638,715 + PP_4103 0.88 +0.3
4,638,715 + PP_4103 0.88 +0.7
4,638,715 + PP_4103 0.88 +0.6
4,638,715 + PP_4103 0.88 -0.5
4,638,875 + +1.3
4,638,922 - -0.2
4,639,070 + +0.5
4,639,071 - +0.1
4,639,191 + PP_4104 0.16 -0.4
4,639,192 - PP_4104 0.16 -0.7
4,639,192 - PP_4104 0.16 -0.2
4,639,245 + PP_4104 0.23 +0.6
4,639,245 + PP_4104 0.23 +0.0
4,639,246 - PP_4104 0.24 +1.0
4,639,246 - PP_4104 0.24 -0.2
4,639,320 + PP_4104 0.34 -0.3
4,639,320 + PP_4104 0.34 +0.9
4,639,348 - PP_4104 0.38 +0.1
4,639,348 - PP_4104 0.38 -0.3
4,639,491 + PP_4104 0.59 +0.2
4,639,707 + PP_4104 0.90 +1.0
4,639,812 + -0.6
4,639,812 + -0.3

Or see this region's nucleotide sequence