Strain Fitness in Pseudomonas putida KT2440 around PP_0539

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0537 and PP_0538 are separated by 182 nucleotidesPP_0538 and PP_0539 are separated by 92 nucleotidesPP_0539 and PP_0540 are separated by 20 nucleotidesPP_0540 and PP_0541 are separated by 217 nucleotides PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906 _0537 PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616 _0538 PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524 _0539 PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192 _0540 PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868 _0541 Position (kb) 625 626 627Strain fitness (log2 ratio) -2 -1 0 1 2 3at 624.986 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 625.000 kb on - strandat 625.000 kb on - strandat 625.009 kb on + strandat 625.658 kb on - strandat 625.658 kb on - strandat 625.660 kb on - strandat 625.660 kb on - strandat 625.783 kb on - strandat 625.783 kb on - strandat 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.804 kb on - strand, within PP_0539at 625.816 kb on - strand, within PP_0539at 625.844 kb on - strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.897 kb on - strand, within PP_0539at 625.956 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.288 kb on + strand, within PP_0539at 626.491 kb on + strandat 626.492 kb on - strandat 626.492 kb on - strandat 626.539 kb on - strandat 626.843 kb on + strand, within PP_0540at 626.843 kb on + strand, within PP_0540at 626.856 kb on + strand, within PP_0540at 626.868 kb on - strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 627.067 kb on + strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.149 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.218 kb on - strandat 627.218 kb on - strandat 627.271 kb on - strandat 627.272 kb on + strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.278 kb on + strandat 627.307 kb on - strandat 627.317 kb on + strandat 627.318 kb on - strandat 627.322 kb on + strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.331 kb on - strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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624,986 + +0.0
624,999 + +3.4
624,999 + -0.1
624,999 + -1.6
625,000 - +0.6
625,000 - -0.2
625,009 + -0.2
625,658 - -0.5
625,658 - -0.8
625,660 - +0.9
625,660 - +0.1
625,783 - -0.3
625,783 - -2.1
625,803 + PP_0539 0.12 -0.9
625,803 + PP_0539 0.12 -0.0
625,803 + PP_0539 0.12 -1.6
625,804 - PP_0539 0.12 -0.3
625,816 - PP_0539 0.13 -0.2
625,844 - PP_0539 0.17 +0.4
625,896 + PP_0539 0.23 +0.9
625,896 + PP_0539 0.23 +1.4
625,896 + PP_0539 0.23 +0.9
625,896 + PP_0539 0.23 -0.5
625,897 - PP_0539 0.23 +1.8
625,956 + PP_0539 0.30 +0.5
626,079 + PP_0539 0.45 +2.5
626,079 + PP_0539 0.45 +0.4
626,079 + PP_0539 0.45 +2.0
626,079 + PP_0539 0.45 +0.5
626,079 + PP_0539 0.45 +1.9
626,079 + PP_0539 0.45 -1.4
626,079 + PP_0539 0.45 +0.2
626,080 - PP_0539 0.45 +0.5
626,080 - PP_0539 0.45 +0.3
626,080 - PP_0539 0.45 +1.4
626,080 - PP_0539 0.45 +0.5
626,080 - PP_0539 0.45 -0.5
626,080 - PP_0539 0.45 +0.2
626,288 + PP_0539 0.71 +0.7
626,491 + -0.8
626,492 - -0.1
626,492 - -0.5
626,539 - +0.1
626,843 + PP_0540 0.46 +0.5
626,843 + PP_0540 0.46 -0.8
626,856 + PP_0540 0.48 +0.9
626,868 - PP_0540 0.50 +0.8
626,936 + PP_0540 0.60 -0.0
626,936 + PP_0540 0.60 +0.7
627,067 + PP_0540 0.81 +0.1
627,068 - PP_0540 0.81 +0.7
627,068 - PP_0540 0.81 +0.4
627,111 - PP_0540 0.87 +0.3
627,111 - PP_0540 0.87 -0.1
627,125 + PP_0540 0.90 -0.1
627,125 + PP_0540 0.90 -0.3
627,126 - PP_0540 0.90 +0.5
627,126 - PP_0540 0.90 -0.8
627,126 - PP_0540 0.90 -1.3
627,126 - PP_0540 0.90 -0.2
627,126 - PP_0540 0.90 -0.2
627,126 - PP_0540 0.90 +0.2
627,126 - PP_0540 0.90 -0.2
627,149 + -0.2
627,194 + +0.4
627,194 + +1.6
627,194 + -0.1
627,194 + -1.2
627,195 - -0.8
627,195 - +0.7
627,195 - -1.6
627,195 - -0.9
627,195 - -0.4
627,218 - -1.4
627,218 - +0.4
627,271 - +1.5
627,272 + +0.4
627,273 - +0.6
627,273 - -0.3
627,273 - -0.4
627,273 - -0.6
627,273 - -1.2
627,273 - -0.6
627,278 + +0.2
627,307 - -0.8
627,317 + +0.6
627,318 - +1.0
627,322 + +0.6
627,323 - -0.0
627,323 - -0.9
627,323 - +0.2
627,331 - +1.0
627,380 + -0.4
627,380 + -1.0
627,380 + +0.0
627,381 - -0.2
627,381 - +1.0
627,381 - +2.3
627,381 - -1.1
627,436 - -0.4
627,436 - +0.4
627,436 - -0.3

Or see this region's nucleotide sequence