Strain Fitness in Pseudomonas putida KT2440 around PP_5342

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
6,088,990	+		PP_5341	0.15	-0.9
6,088,990	+		PP_5341	0.15	-0.4
6,088,991	-		PP_5341	0.15	+1.4
6,089,060	+		PP_5341	0.22	+0.3
6,089,060	+		PP_5341	0.22	-3.0
6,089,060	+		PP_5341	0.22	+0.5
6,089,060	+		PP_5341	0.22	+1.0
6,089,061	-		PP_5341	0.22	+2.5
6,089,061	-		PP_5341	0.22	-0.5
6,089,061	-		PP_5341	0.22	+0.4
6,089,061	-		PP_5341	0.22	-0.4
6,089,063	+		PP_5341	0.22	-0.3
6,089,063	+		PP_5341	0.22	+0.6
6,089,064	-		PP_5341	0.22	-2.9
6,089,212	+		PP_5341	0.35	+0.2
6,089,212	+		PP_5341	0.35	-0.9
6,089,212	+		PP_5341	0.35	-0.6
6,089,213	-		PP_5341	0.35	+2.4
6,089,213	-		PP_5341	0.35	+1.8
6,089,213	-		PP_5341	0.35	+1.2
6,089,213	-		PP_5341	0.35	-2.3
6,089,213	-		PP_5341	0.35	-0.8
6,089,213	-		PP_5341	0.35	+0.8
6,089,213	-		PP_5341	0.35	+0.0
6,089,214	+		PP_5341	0.36	+0.4
6,089,214	+		PP_5341	0.36	+1.2
6,089,214	+		PP_5341	0.36	+0.2
6,089,214	+		PP_5341	0.36	-1.5
6,089,214	+		PP_5341	0.36	+0.0
6,089,215	-		PP_5341	0.36	+2.3
6,089,215	-		PP_5341	0.36	+1.8
6,089,215	-		PP_5341	0.36	+2.3
6,089,215	-		PP_5341	0.36	-1.0
6,089,215	-		PP_5341	0.36	-0.7
6,089,215	-		PP_5341	0.36	+1.3
6,089,215	-		PP_5341	0.36	+1.6
6,089,215	-		PP_5341	0.36	+0.8
6,089,215	-		PP_5341	0.36	-0.1
6,089,215	-		PP_5341	0.36	-0.1
6,089,215	-		PP_5341	0.36	-1.0
6,089,218	+		PP_5341	0.36	-0.2
6,089,218	+		PP_5341	0.36	+0.1
6,089,218	+		PP_5341	0.36	-0.1
6,089,218	+		PP_5341	0.36	-2.0
6,089,218	+		PP_5341	0.36	+0.7
6,089,219	-		PP_5341	0.36	-0.8
6,089,219	-		PP_5341	0.36	-2.2
6,089,375	+		PP_5341	0.50	-1.6
6,089,375	+		PP_5341	0.50	+0.2
6,089,393	-		PP_5341	0.52	-1.3
6,089,431	+		PP_5341	0.55	+1.2
6,089,472	+		PP_5341	0.59	-1.1
6,089,479	+		PP_5341	0.60	-0.6
6,089,480	-		PP_5341	0.60	+1.6
6,089,480	-		PP_5341	0.60	+2.1
6,089,480	-		PP_5341	0.60	-0.2
6,089,497	+		PP_5341	0.61	+0.7
6,089,497	+		PP_5341	0.61	-0.2
6,089,497	+		PP_5341	0.61	+0.4
6,089,497	+		PP_5341	0.61	-2.8
6,089,497	+		PP_5341	0.61	+0.8
6,089,498	-		PP_5341	0.61	-0.3
6,089,542	+		PP_5341	0.65	+1.2
6,089,691	+		PP_5341	0.79	-2.9
6,089,691	+		PP_5341	0.79	-2.9
6,089,691	+		PP_5341	0.79	-0.8
6,089,691	+		PP_5341	0.79	+1.8
6,089,691	+		PP_5341	0.79	-0.3
6,089,691	+		PP_5341	0.79	+2.1
6,089,691	+		PP_5341	0.79	+0.7
6,089,691	+		PP_5341	0.79	-0.1
6,089,692	-		PP_5341	0.79	+0.7
6,089,692	-		PP_5341	0.79	-2.2
6,089,705	-		PP_5341	0.80	+2.2
6,089,705	-		PP_5341	0.80	-0.6
6,089,818	+				+1.8
6,089,848	+				+1.3
6,089,848	+				+0.6
6,089,848	+				-0.8
6,089,848	+				+0.4
6,089,849	-				-0.3
6,089,849	-				-0.7
6,089,849	-				-1.7
6,089,850	+				-1.4
6,089,850	+				-0.9
6,089,850	+				-0.9
6,089,851	-				-1.7
6,089,999	+				-1.8
6,090,275	-		PP_5342	0.21	-0.3
6,090,359	+		PP_5342	0.26	-0.7
6,090,360	-		PP_5342	0.26	-0.1
6,090,361	+		PP_5342	0.26	+0.8
6,090,361	+		PP_5342	0.26	+1.6
6,090,361	+		PP_5342	0.26	-0.3
6,090,361	+		PP_5342	0.26	+0.4
6,090,361	+		PP_5342	0.26	+1.2
6,090,361	+		PP_5342	0.26	+0.9
6,090,361	+		PP_5342	0.26	-1.3
6,090,361	+		PP_5342	0.26	+2.7
6,090,361	+		PP_5342	0.26	-2.8
6,090,362	-		PP_5342	0.26	+0.9
6,090,362	-		PP_5342	0.26	+1.0
6,090,362	-		PP_5342	0.26	+0.4
6,090,362	-		PP_5342	0.26	+0.3
6,090,362	-		PP_5342	0.26	-2.3
6,090,362	-		PP_5342	0.26	+0.5
6,090,362	-		PP_5342	0.26	+0.9
6,090,362	-		PP_5342	0.26	-0.9
6,090,362	-		PP_5342	0.26	-0.8
6,090,411	+		PP_5342	0.30	-1.6
6,090,416	+		PP_5342	0.30	+0.4
6,090,417	-		PP_5342	0.30	-2.6
6,090,459	+		PP_5342	0.33	-0.5
6,090,459	+		PP_5342	0.33	-2.9
6,090,460	-		PP_5342	0.33	-0.5
6,090,460	-		PP_5342	0.33	-0.4
6,090,460	-		PP_5342	0.33	-2.4
6,090,645	+		PP_5342	0.45	-0.0
6,090,645	+		PP_5342	0.45	-2.2
6,090,645	+		PP_5342	0.45	-0.2
6,090,645	+		PP_5342	0.45	+1.5
6,090,645	+		PP_5342	0.45	-0.6
6,090,646	-		PP_5342	0.45	+0.1
6,090,646	-		PP_5342	0.45	+2.2
6,090,646	-		PP_5342	0.45	+0.3
6,090,646	-		PP_5342	0.45	-0.0
6,090,762	+				+1.1
6,090,893	+		PP_5342	0.61	-1.8
6,090,894	-		PP_5342	0.61	-1.1
6,090,897	+		PP_5342	0.61	-0.4
6,090,898	-		PP_5342	0.62	+0.0
6,090,906	-		PP_5342	0.62	-1.1
6,090,945	+		PP_5342	0.65	+1.2
6,090,945	+		PP_5342	0.65	+0.7
6,091,114	+		PP_5342	0.76	+0.1
6,091,175	+		PP_5342	0.80	+0.8
6,091,199	+		PP_5342	0.81	+0.1
6,091,200	-		PP_5342	0.81	-0.2
6,091,200	-		PP_5342	0.81	+0.4
6,091,200	-		PP_5342	0.81	-0.8
6,091,233	+		PP_5342	0.83	+0.4
6,091,233	+		PP_5342	0.83	-1.4
6,091,233	+		PP_5342	0.83	+1.4
6,091,234	-		PP_5342	0.83	-0.8
6,091,234	-		PP_5342	0.83	-0.7
6,091,275	+		PP_5342	0.86	+1.4
6,091,276	-		PP_5342	0.86	+0.4
6,091,276	-		PP_5342	0.86	-1.1
6,091,358	-				+0.8
6,091,404	+				+0.1
6,091,404	+				-1.1
6,091,405	-				+0.3
6,091,406	+				-0.2
6,091,406	+				+1.6
6,091,406	+				-2.7
6,091,406	+				-0.1
6,091,406	+				+0.1
6,091,406	+				-0.5
6,091,407	-				-0.3
6,091,466	+				-0.4
6,091,466	+				-0.3
6,091,467	-				+1.0
6,091,467	-				+1.0
6,091,489	+				-0.4
6,091,489	+				+0.7
6,091,514	-				-1.8
6,091,523	+				-1.0
6,091,523	+				-1.1
6,091,523	+				+0.8
6,091,545	+				-0.7
6,091,545	+				+1.1
6,091,546	-				-1.5
6,091,546	-				+0.1
6,091,579	+				-1.3
6,091,579	+				-2.1
6,091,579	+				+0.7
6,091,579	+				-0.6
6,091,580	-				+1.0
6,091,580	-				+1.2
6,091,580	-				+0.1
6,091,580	-				+1.3
6,091,580	-				-1.0
6,091,580	-				+1.7
6,091,580	-				+1.5
6,091,580	-				-0.2
6,091,587	+				-0.0
6,091,587	+				+0.1
6,091,588	-				-0.2
6,091,588	-				-1.1
6,091,588	-				+0.1
6,091,588	-				-0.2
6,091,634	+				-0.6
6,091,634	+				+1.3
6,091,634	+				+0.9
6,091,634	+				+5.0
6,091,634	+				-0.3
6,091,635	-				-0.1
6,091,635	-				+0.4
6,091,635	-				+0.1
6,091,635	-				-0.2
6,091,635	-				+1.2
6,091,738	+		PP_5343	0.26	-0.2
6,091,738	+		PP_5343	0.26	-0.9
6,091,739	-		PP_5343	0.26	-0.9
6,091,739	-		PP_5343	0.26	-0.8
6,091,739	-		PP_5343	0.26	+1.5
6,091,739	-		PP_5343	0.26	-0.9
6,091,739	-		PP_5343	0.26	-0.7
6,091,739	-		PP_5343	0.26	-0.1
6,091,806	-		PP_5343	0.37	+0.2
6,091,825	+		PP_5343	0.40	+0.2
6,091,825	+		PP_5343	0.40	+0.5
6,091,825	+		PP_5343	0.40	-0.4
6,091,826	-		PP_5343	0.40	-0.7
6,091,840	+		PP_5343	0.42	-1.1
6,091,841	-		PP_5343	0.42	-1.2
6,091,841	-		PP_5343	0.42	+2.0
6,091,843	+		PP_5343	0.42	-0.8
6,091,844	-		PP_5343	0.43	-1.6
6,091,889	-		PP_5343	0.50	-0.8
6,091,906	+		PP_5343	0.52	+0.9
6,091,906	+		PP_5343	0.52	-3.5
6,091,907	-		PP_5343	0.53	+1.9
6,091,907	-		PP_5343	0.53	+2.9
6,091,924	-		PP_5343	0.55	-1.1
6,091,924	-		PP_5343	0.55	+1.0
6,092,027	-		PP_5343	0.72	+1.8
6,092,211	+				-0.7
6,092,212	-				-2.2
6,092,228	+				-1.6
6,092,228	+				+0.0
6,092,228	+				+0.2
6,092,229	-				-0.7
6,092,286	+		PP_5344	0.15	-0.8
6,092,286	+		PP_5344	0.15	-0.8
6,092,286	+		PP_5344	0.15	+0.2
6,092,286	+		PP_5344	0.15	-1.9
6,092,287	-		PP_5344	0.16	-0.2
6,092,299	-		PP_5344	0.18	-0.2
6,092,424	+		PP_5344	0.46	+0.7
6,092,424	+		PP_5344	0.46	+1.9
6,092,424	+		PP_5344	0.46	+0.6
6,092,425	-		PP_5344	0.47	+1.2
6,092,425	-		PP_5344	0.47	-3.3
6,092,460	+		PP_5344	0.54	-2.4
6,092,461	-		PP_5344	0.55	+0.7
6,092,475	+		PP_5344	0.58	+1.2
6,092,475	+		PP_5344	0.58	-1.7
6,092,475	+		PP_5344	0.58	-0.4
6,092,475	+		PP_5344	0.58	-0.2
6,092,475	+		PP_5344	0.58	-0.6
6,092,475	+		PP_5344	0.58	+1.0
6,092,476	-		PP_5344	0.58	+0.5
6,092,476	-		PP_5344	0.58	-2.2
6,092,476	-		PP_5344	0.58	+0.0
6,092,476	-		PP_5344	0.58	+1.8
6,092,476	-		PP_5344	0.58	+0.5
6,092,476	-		PP_5344	0.58	-0.5
6,092,476	-		PP_5344	0.58	+0.7
6,092,476	-		PP_5344	0.58	-0.5
6,092,476	-		PP_5344	0.58	-0.2