Strain Fitness in Pseudomonas putida KT2440 around PP_4862

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
5,527,086	+		PP_4860	0.53	+2.2
5,527,087	-		PP_4860	0.53	-0.2
5,527,087	-		PP_4860	0.53	+1.0
5,527,210	+		PP_4860	0.64	-0.4
5,527,247	+		PP_4860	0.67	+1.1
5,527,247	+		PP_4860	0.67	+0.2
5,527,248	-		PP_4860	0.67	+1.2
5,527,248	-		PP_4860	0.67	-2.7
5,527,258	+		PP_4860	0.68	-1.7
5,527,258	+		PP_4860	0.68	+0.7
5,527,258	+		PP_4860	0.68	-2.0
5,527,258	+		PP_4860	0.68	-1.5
5,527,258	+		PP_4860	0.68	-0.4
5,527,259	-		PP_4860	0.68	+0.3
5,527,299	+		PP_4860	0.72	-0.2
5,527,299	+		PP_4860	0.72	-0.6
5,527,299	+		PP_4860	0.72	+0.5
5,527,300	-		PP_4860	0.72	+0.9
5,527,300	-		PP_4860	0.72	+0.7
5,527,300	-		PP_4860	0.72	+2.0
5,527,300	-		PP_4860	0.72	-1.5
5,527,300	-		PP_4860	0.72	-2.6
5,527,399	+		PP_4860	0.80	-0.4
5,527,399	+		PP_4860	0.80	+2.4
5,527,400	-		PP_4860	0.80	+0.9
5,527,400	-		PP_4860	0.80	-3.3
5,527,419	-		PP_4860	0.82	-0.7
5,527,432	+		PP_4860	0.83	+0.6
5,527,432	+		PP_4860	0.83	+0.5
5,527,433	-		PP_4860	0.83	+0.5
5,527,433	-		PP_4860	0.83	-0.5
5,527,433	-		PP_4860	0.83	-0.0
5,527,514	+				-0.6
5,527,515	-				-1.7
5,527,515	-				-2.0
5,527,515	-				+1.7
5,527,586	-				+1.6
5,527,619	+				-0.4
5,527,619	+				+0.5
5,527,620	-				-1.2
5,527,620	-				-0.8
5,527,620	-				-0.4
5,527,626	+				-0.1
5,527,627	-				-2.5
5,527,627	-				+0.4
5,527,627	-				+0.3
5,527,683	+				+0.2
5,527,683	+				+0.6
5,527,684	-				+1.6
5,527,716	+				-2.2
5,527,717	-				+1.8
5,527,717	-				-1.7
5,527,785	+		PP_4861	0.24	-0.7
5,527,785	+		PP_4861	0.24	-0.7
5,527,786	-		PP_4861	0.25	-1.7
5,527,786	-		PP_4861	0.25	+1.3
5,527,806	-		PP_4861	0.33	+0.7
5,527,836	-		PP_4861	0.45	-0.4
5,527,842	+		PP_4861	0.47	+3.6
5,527,842	+		PP_4861	0.47	+0.5
5,527,842	+		PP_4861	0.47	-2.5
5,527,843	-		PP_4861	0.48	+0.7
5,527,843	-		PP_4861	0.48	-1.2
5,527,926	+		PP_4861	0.81	-0.1
5,527,957	+				+0.1
5,527,957	+				+0.1
5,527,957	+				+0.9
5,527,957	+				+0.3
5,527,957	+				-1.3
5,527,958	-				-0.9
5,527,958	-				+0.5
5,527,961	+				-0.2
5,527,962	-				-2.5
5,527,962	-				+0.5
5,527,963	+				-0.9
5,527,963	+				+1.1
5,527,963	+				-0.1
5,528,017	+				+0.5
5,528,017	+				+0.6
5,528,018	-				-0.3
5,528,023	+				-0.4
5,528,023	+				+0.4
5,528,023	+				+0.1
5,528,024	-				+0.5
5,528,024	-				+1.2
5,528,091	+				+0.9
5,528,142	-		PP_4862	0.16	+1.3
5,528,177	+		PP_4862	0.20	+0.2
5,528,177	+		PP_4862	0.20	+0.7
5,528,185	+				+2.3
5,528,185	+		PP_4862	0.21	+3.1
5,528,185	+		PP_4862	0.21	-0.7
5,528,185	+		PP_4862	0.21	+0.8
5,528,186	-		PP_4862	0.21	-0.2
5,528,333	-		PP_4862	0.41	+0.9
5,528,333	-		PP_4862	0.41	-2.1
5,528,356	+		PP_4862	0.44	+1.4
5,528,356	+		PP_4862	0.44	-0.8
5,528,356	+		PP_4862	0.44	-0.1
5,528,356	+		PP_4862	0.44	+0.7
5,528,356	+		PP_4862	0.44	+1.7
5,528,357	-		PP_4862	0.44	+0.4
5,528,357	-		PP_4862	0.44	+1.8
5,528,357	-		PP_4862	0.44	+1.3
5,528,357	-		PP_4862	0.44	+1.6
5,528,440	+		PP_4862	0.55	+2.0
5,528,440	+		PP_4862	0.55	+2.3
5,528,440	+		PP_4862	0.55	+0.1
5,528,441	-		PP_4862	0.55	-0.1
5,528,441	-		PP_4862	0.55	-0.3
5,528,441	-		PP_4862	0.55	-0.5
5,528,441	-		PP_4862	0.55	-0.3
5,528,441	-		PP_4862	0.55	-0.2
5,528,441	-		PP_4862	0.55	-2.3
5,528,441	-		PP_4862	0.55	+0.7
5,528,582	+		PP_4862	0.73	+0.2
5,528,582	+		PP_4862	0.73	+2.5
5,528,582	+		PP_4862	0.73	-2.2
5,528,582	+		PP_4862	0.73	-0.3
5,528,583	-		PP_4862	0.73	-0.4
5,528,697	+		PP_4862	0.88	-1.5
5,528,698	-		PP_4862	0.88	+0.7
5,528,698	-		PP_4862	0.88	+1.5
5,528,773	-				-3.4
5,528,803	+				+0.3
5,528,804	-				-0.9
5,528,804	-				-1.0
5,528,804	-				+0.1
5,528,923	+				+0.1
5,528,924	-				-0.9
5,528,924	-				+1.9
5,528,979	+				-0.0
5,528,980	-				+2.2
5,529,164	-				-1.0
5,529,253	+				+0.9
5,529,301	+				+0.7
5,529,301	+				+2.8
5,529,301	+				+0.3
5,529,302	-				+0.4
5,529,302	-				-0.3
5,529,397	-				+0.5
5,529,474	+		PP_4863	0.13	+0.8
5,529,474	+		PP_4863	0.13	-0.1
5,529,474	+		PP_4863	0.13	+0.1
5,529,474	+		PP_4863	0.13	+0.8
5,529,475	-		PP_4863	0.13	-0.8
5,529,475	-		PP_4863	0.13	-2.0
5,529,475	-		PP_4863	0.13	-0.0
5,529,475	-		PP_4863	0.13	+0.5
5,529,529	+		PP_4863	0.21	-0.3
5,529,529	+		PP_4863	0.21	+1.0
5,529,529	+		PP_4863	0.21	-0.5
5,529,530	-		PP_4863	0.21	-0.2
5,529,530	-		PP_4863	0.21	+0.3
5,529,530	-		PP_4863	0.21	-0.4
5,529,530	-		PP_4863	0.21	+3.2
5,529,530	-		PP_4863	0.21	+2.6
5,529,530	-		PP_4863	0.21	-0.9
5,529,735	+		PP_4863	0.50	-1.1
5,529,735	+		PP_4863	0.50	+0.8
5,529,735	+				-0.0
5,529,736	-		PP_4863	0.50	-1.2
5,529,736	-		PP_4863	0.50	+0.5
5,529,736	-		PP_4863	0.50	-0.1
5,529,736	-		PP_4863	0.50	-0.5
5,529,739	+		PP_4863	0.50	-0.9
5,529,739	+		PP_4863	0.50	-0.3
5,529,739	+		PP_4863	0.50	-1.6
5,529,739	+		PP_4863	0.50	+0.4
5,529,740	-		PP_4863	0.50	-1.0
5,529,740	-		PP_4863	0.50	-0.6
5,529,740	-		PP_4863	0.50	+0.8
5,529,740	-		PP_4863	0.50	+1.8
5,529,784	+		PP_4863	0.56	-1.1
5,529,784	+		PP_4863	0.56	+0.0
5,529,785	-		PP_4863	0.56	+0.6