Strain Fitness in Pseudomonas putida KT2440 around PP_2561

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
2,909,986	+		PP_2560	0.74	-0.5
2,909,987	-		PP_2560	0.74	+0.4
2,910,001	+		PP_2560	0.75	+0.4
2,910,045	-		PP_2560	0.77	-0.1
2,910,183	+		PP_2560	0.85	+0.6
2,910,261	+		PP_2560	0.90	-0.3
2,910,298	+				+1.2
2,910,298	+				-1.1
2,910,299	-				-0.4
2,910,299	-				-0.0
2,910,311	+				-0.6
2,910,312	-				-1.7
2,910,312	-				-0.5
2,910,312	-				-0.6
2,910,312	-				+0.3
2,910,312	-				-0.3
2,910,313	+				-0.4
2,910,313	+				-2.5
2,910,314	-				-0.0
2,910,314	-				-1.5
2,910,314	-				-0.7
2,910,314	-				+0.3
2,910,431	+				-3.1
2,910,432	-				-1.5
2,910,452	+				-0.9
2,910,453	-				-0.7
2,910,453	-				+1.7
2,910,486	-				+0.2
2,910,581	-				-0.2
2,910,581	-				-2.0
2,910,602	+				+0.3
2,910,606	-				+0.2
2,910,620	+				-0.2
2,910,621	-				-0.5
2,910,781	-				-0.5
2,911,091	-				-0.9
2,911,122	+				+0.0
2,911,122	+				-0.8
2,911,123	-				+0.1
2,911,123	-				-0.2
2,911,123	-				+0.3
2,911,209	+				+0.8
2,911,348	+				+0.8
2,911,349	-				+0.4
2,911,349	-				+0.3
2,911,349	-				-0.8
2,911,668	+				+0.4
2,911,669	-				+0.4
2,911,669	-				-0.6
2,911,708	-				+2.4
2,911,708	-				-1.6
2,911,898	+				-2.4
2,911,898	+				+0.4
2,911,899	-				-0.2
2,911,926	+				+0.7
2,912,212	-		PP_2561	0.11	-0.1
2,912,239	-		PP_2561	0.12	+2.3
2,912,395	+		PP_2561	0.13	-0.6
2,912,491	-		PP_2561	0.14	+0.9
2,912,955	+		PP_2561	0.18	-0.3
2,912,956	-		PP_2561	0.18	+0.6
2,912,988	+		PP_2561	0.19	-1.7
2,912,988	+		PP_2561	0.19	+2.0
2,912,989	-		PP_2561	0.19	-1.0
2,913,127	+		PP_2561	0.20	-0.5
2,913,128	-		PP_2561	0.20	-0.4
2,913,186	+		PP_2561	0.20	+1.0
2,913,187	-		PP_2561	0.20	+0.5
2,913,187	-		PP_2561	0.20	+0.0
2,913,393	+				-1.5
2,913,393	+		PP_2561	0.22	-1.1
2,913,393	+		PP_2561	0.22	-3.0
2,913,393	+		PP_2561	0.22	-0.5
2,913,397	-		PP_2561	0.22	+0.8
2,913,678	+		PP_2561	0.25	-0.1
2,913,678	+		PP_2561	0.25	-0.5
2,913,679	-		PP_2561	0.25	-0.8
2,913,759	+		PP_2561	0.26	-0.7
2,913,906	-		PP_2561	0.27	+0.1
2,914,037	+		PP_2561	0.28	-0.3
2,914,038	-		PP_2561	0.28	+0.4
2,914,038	-		PP_2561	0.28	-1.3
2,914,520	-		PP_2561	0.33	-0.5
2,914,520	-		PP_2561	0.33	+1.5
2,914,849	+		PP_2561	0.36	+0.3
2,914,850	-		PP_2561	0.36	+1.3
2,914,873	-		PP_2561	0.36	-3.1
2,914,873	-		PP_2561	0.36	+1.0
2,915,011	+		PP_2561	0.37	-0.5
2,915,012	-		PP_2561	0.37	-1.7
2,915,082	-		PP_2561	0.38	+0.7
2,915,099	+		PP_2561	0.38	+0.8
2,915,099	+		PP_2561	0.38	+1.0
2,915,099	+		PP_2561	0.38	+2.3
2,915,100	-		PP_2561	0.38	-0.9
2,915,135	+		PP_2561	0.38	-1.0
2,915,135	+		PP_2561	0.38	-1.9
2,915,135	+		PP_2561	0.38	+1.9
2,915,136	-		PP_2561	0.38	+0.1
2,915,136	-		PP_2561	0.38	-2.6
2,915,185	-		PP_2561	0.39	+0.4
2,915,185	-		PP_2561	0.39	-0.4
2,915,243	-		PP_2561	0.39	-0.3
2,915,337	+		PP_2561	0.40	+1.3
2,915,337	+		PP_2561	0.40	+1.1
2,915,382	-		PP_2561	0.41	+2.1
2,915,686	+		PP_2561	0.43	+0.2
2,915,798	+		PP_2561	0.44	+0.8
2,915,798	+		PP_2561	0.44	+1.1
2,915,799	-		PP_2561	0.44	+0.1
2,915,799	-		PP_2561	0.44	+1.3
2,915,847	+		PP_2561	0.45	+1.2
2,915,848	-		PP_2561	0.45	+1.5
2,915,859	+		PP_2561	0.45	+2.1
2,915,859	+		PP_2561	0.45	-1.6
2,915,991	+		PP_2561	0.46	+0.7
2,915,991	+				-1.0
2,916,117	+		PP_2561	0.47	-0.2
2,916,117	+		PP_2561	0.47	+0.8
2,916,117	+		PP_2561	0.47	-0.2
2,916,117	+		PP_2561	0.47	+0.4
2,916,118	-		PP_2561	0.47	-0.9
2,916,118	-		PP_2561	0.47	-1.6
2,916,118	-		PP_2561	0.47	-1.8
2,916,118	-		PP_2561	0.47	+1.4
2,916,118	-		PP_2561	0.47	-0.7
2,916,118	-		PP_2561	0.47	-0.0
2,916,118	-		PP_2561	0.47	+0.3
2,916,118	-		PP_2561	0.47	-2.2
2,916,181	+		PP_2561	0.48	+0.4
2,916,288	+		PP_2561	0.49	-3.4
2,916,288	+		PP_2561	0.49	+1.4
2,916,288	+		PP_2561	0.49	-0.0
2,916,313	-		PP_2561	0.49	-1.1
2,916,327	+		PP_2561	0.49	-0.4
2,916,599	+		PP_2561	0.52	+0.4
2,916,811	-		PP_2561	0.54	+0.0
2,916,837	+		PP_2561	0.54	+1.2
2,916,837	+		PP_2561	0.54	-0.4
2,917,165	+		PP_2561	0.57	-2.0
2,917,168	-		PP_2561	0.57	-0.8
2,917,168	-		PP_2561	0.57	-3.9
2,917,216	+		PP_2561	0.58	+1.1
2,917,998	+		PP_2561	0.65	-0.3
2,917,999	-		PP_2561	0.65	+0.0
2,918,001	+		PP_2561	0.65	-1.7
2,918,002	-		PP_2561	0.65	+0.7
2,918,002	-		PP_2561	0.65	-0.3
2,918,128	-		PP_2561	0.66	-0.9
2,918,128	-		PP_2561	0.66	+0.2
2,918,128	-		PP_2561	0.66	+1.0
2,918,155	-		PP_2561	0.66	+1.0
2,918,250	+		PP_2561	0.67	+0.3
2,918,250	+		PP_2561	0.67	-0.3
2,918,250	+		PP_2561	0.67	-0.1
2,918,251	-		PP_2561	0.67	-0.0
2,918,306	+		PP_2561	0.68	+1.2
2,918,714	-		PP_2561	0.71	+1.9
2,918,714	-		PP_2561	0.71	+5.4
2,918,799	+		PP_2561	0.72	+1.6
2,918,799	+		PP_2561	0.72	+1.0
2,918,799	+		PP_2561	0.72	+1.0
2,918,800	-		PP_2561	0.72	-1.5
2,919,094	-		PP_2561	0.75	-1.0
2,919,288	+		PP_2561	0.77	+0.0
2,919,288	+		PP_2561	0.77	-1.4
2,919,289	-		PP_2561	0.77	-0.6
2,919,289	-		PP_2561	0.77	-2.9
2,919,289	-		PP_2561	0.77	-0.0
2,919,289	-		PP_2561	0.77	-0.0
2,919,289	-		PP_2561	0.77	+0.3
2,919,343	-		PP_2561	0.77	-0.4
2,919,343	-		PP_2561	0.77	+0.8
2,919,357	+		PP_2561	0.77	+0.9
2,919,358	-		PP_2561	0.77	+1.5
2,919,575	+		PP_2561	0.79	+1.0
2,919,576	-		PP_2561	0.79	-1.5
2,919,681	+		PP_2561	0.80	-0.0
2,919,682	-		PP_2561	0.80	-1.8
2,919,685	-		PP_2561	0.80	-1.3
2,919,737	-		PP_2561	0.81	-2.7
2,920,104	+		PP_2561	0.84	-0.5
2,920,105	-		PP_2561	0.84	-1.5
2,920,302	-		PP_2561	0.86	+1.1
2,920,471	+		PP_2561	0.88	-0.2
2,920,511	+		PP_2561	0.88	-2.4
2,920,512	-		PP_2561	0.88	+0.3
2,920,715	+		PP_2561	0.90	+0.6
2,920,715	+		PP_2561	0.90	-0.9
2,920,716	-		PP_2561	0.90	-1.0
2,920,716	-		PP_2561	0.90	+5.3
2,920,801	-				-0.9
2,920,833	+				+0.1
2,920,965	+				-0.3
2,920,965	+				+1.8
2,920,965	+				-0.5
2,920,965	+				+1.8
2,920,966	-				-1.6
2,920,966	-				+1.0
2,920,966	-				+1.0
2,920,966	-				-0.8
2,920,966	-				-3.0
2,920,966	-				-1.5
2,921,030	+				+2.9
2,921,080	-				-0.2
2,921,081	+				-0.5
2,921,147	+				-1.0
2,921,499	-				+0.7
2,921,499	-				+4.4
2,921,505	-				-1.5
2,921,719	+				+1.6
2,921,719	+				+0.5
2,921,720	-				-0.6
2,921,720	-				-0.7
2,921,720	-				-0.1
2,921,744	-				+0.6
2,922,069	+		PP_2562	0.21	+2.4
2,922,069	+		PP_2562	0.21	+0.6
2,922,070	-		PP_2562	0.21	+0.4
2,922,215	+		PP_2562	0.51	-0.3
2,922,215	+		PP_2562	0.51	+0.5
2,922,215	+		PP_2562	0.51	-0.0
2,922,216	-		PP_2562	0.51	-1.8
2,922,235	-		PP_2562	0.55	-0.2
2,922,342	+		PP_2562	0.77	-0.1
2,922,342	+		PP_2562	0.77	+1.2
2,922,342	+		PP_2562	0.77	-0.4
2,922,342	+		PP_2562	0.77	+0.7
2,922,343	-		PP_2562	0.77	-0.5
2,922,343	-		PP_2562	0.77	+1.7
2,922,453	-				+0.5
2,922,453	-				+1.2
2,922,578	+				-0.8
2,922,578	+				-1.7
2,922,677	+				+0.8
2,922,677	+				+0.5
2,922,678	-				+0.5
2,922,678	-				+2.4
2,922,681	+				-0.5
2,922,682	-				-2.5
2,922,682	-				-2.0
2,922,683	+				+0.1
2,922,683	+				+0.5
2,922,683	+				+2.5
2,922,684	+				+0.3
2,922,684	-				-0.1
2,922,684	-				-2.2
2,922,684	-				-1.2
2,922,684	-				+0.1
2,922,684	-				+1.4
2,922,684	-				+0.9
2,922,684	-				-0.9
2,922,684	-				+0.6
2,922,734	-				-2.0
2,922,791	+		PP_2563	0.11	-1.6
2,922,791	+		PP_2563	0.11	+0.8
2,922,791	+		PP_2563	0.11	-2.2
2,922,791	+		PP_2563	0.11	-3.2
2,922,791	+		PP_2563	0.11	-1.0
2,922,792	-		PP_2563	0.11	+0.6
2,922,792	-		PP_2563	0.11	-0.4
2,922,799	-		PP_2563	0.11	+0.2
2,922,799	-		PP_2563	0.11	+1.1