Strain Fitness in Pseudomonas putida KT2440 around PP_0554

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0553 and PP_0554 overlap by 4 nucleotidesPP_0554 and PP_0555 are separated by 33 nucleotides PP_0553: PP_0553 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 641,880 to 642,986 _0553 PP_0554: PP_0554 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta, at 642,983 to 644,005 _0554 PP_0555: PP_0555 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 644,039 to 645,016 _0555 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 642.262 kb on + strand, within PP_0553at 642.263 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.634 kb on - strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.711 kb on + strand, within PP_0553at 642.712 kb on - strand, within PP_0553at 642.712 kb on - strand, within PP_0553at 642.962 kb on + strandat 642.963 kb on - strandat 642.963 kb on - strandat 642.972 kb on - strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.091 kb on - strand, within PP_0554at 643.350 kb on + strand, within PP_0554at 643.351 kb on - strand, within PP_0554at 643.355 kb on - strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.447 kb on - strand, within PP_0554at 643.521 kb on + strand, within PP_0554at 643.522 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.669 kb on - strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.840 kb on - strand, within PP_0554at 643.931 kb on + strandat 643.931 kb on + strandat 643.931 kb on + strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.987 kb on - strandat 644.055 kb on + strandat 644.259 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.292 kb on + strand, within PP_0555at 644.370 kb on + strand, within PP_0555at 644.371 kb on - strand, within PP_0555at 644.371 kb on - strand, within PP_0555at 644.372 kb on + strand, within PP_0555at 644.485 kb on - strand, within PP_0555at 644.754 kb on + strand, within PP_0555at 644.755 kb on - strand, within PP_0555at 644.889 kb on + strand, within PP_0555at 644.890 kb on - strand, within PP_0555at 644.890 kb on - strand, within PP_0555at 644.976 kb on + strandat 644.976 kb on + strandat 644.977 kb on - strandat 644.999 kb on - strandat 644.999 kb on - strandat 644.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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642,262 + PP_0553 0.35 +0.2
642,263 - PP_0553 0.35 +2.3
642,634 - PP_0553 0.68 +0.3
642,634 - PP_0553 0.68 +0.5
642,711 + PP_0553 0.75 +1.2
642,711 + PP_0553 0.75 -0.2
642,711 + PP_0553 0.75 +1.1
642,712 - PP_0553 0.75 +0.0
642,712 - PP_0553 0.75 -1.2
642,962 + +0.7
642,963 - -1.3
642,963 - -0.6
642,972 - -3.2
643,053 + +2.1
643,053 + -1.5
643,053 + -0.2
643,053 + -0.4
643,053 + -0.4
643,053 + -2.1
643,053 + +0.2
643,053 + +0.8
643,053 + +0.6
643,054 - -0.3
643,054 - -1.7
643,054 - -0.5
643,091 - PP_0554 0.11 -0.8
643,350 + PP_0554 0.36 -2.0
643,351 - PP_0554 0.36 -0.5
643,355 - PP_0554 0.36 -1.5
643,413 + PP_0554 0.42 -2.3
643,413 + PP_0554 0.42 -3.8
643,414 - PP_0554 0.42 -1.2
643,414 - PP_0554 0.42 +0.6
643,414 - PP_0554 0.42 +1.1
643,414 - PP_0554 0.42 +1.3
643,414 - PP_0554 0.42 +1.5
643,446 + PP_0554 0.45 -0.8
643,446 + PP_0554 0.45 -2.0
643,446 + PP_0554 0.45 -1.7
643,447 - PP_0554 0.45 -0.5
643,521 + PP_0554 0.53 +1.5
643,522 - PP_0554 0.53 -0.8
643,621 - PP_0554 0.62 -0.3
643,621 - PP_0554 0.62 -0.4
643,621 - PP_0554 0.62 -3.2
643,621 - PP_0554 0.62 -1.8
643,621 - PP_0554 0.62 +0.2
643,621 - PP_0554 0.62 -2.5
643,621 - PP_0554 0.62 -0.6
643,668 + PP_0554 0.67 -0.6
643,668 + PP_0554 0.67 +1.2
643,669 - PP_0554 0.67 -0.7
643,839 + PP_0554 0.84 +1.9
643,839 + PP_0554 0.84 -1.7
643,840 - PP_0554 0.84 -0.9
643,931 + -0.5
643,931 + -0.3
643,931 + -0.8
643,932 - +1.7
643,932 - +1.9
643,932 - +0.3
643,932 - +0.9
643,987 - -1.6
644,055 + -3.9
644,259 + PP_0555 0.22 -2.4
644,289 + PP_0555 0.26 -0.2
644,289 + PP_0555 0.26 -0.0
644,289 + PP_0555 0.26 +2.4
644,292 + PP_0555 0.26 +0.3
644,370 + PP_0555 0.34 -1.1
644,371 - PP_0555 0.34 +0.3
644,371 - PP_0555 0.34 -0.4
644,372 + PP_0555 0.34 -1.7
644,485 - PP_0555 0.46 -2.6
644,754 + PP_0555 0.73 -1.8
644,755 - PP_0555 0.73 +0.0
644,889 + PP_0555 0.87 -1.5
644,890 - PP_0555 0.87 -0.4
644,890 - PP_0555 0.87 +2.0
644,976 + -1.5
644,976 + -0.7
644,977 - +0.7
644,999 - -2.8
644,999 - -0.2
644,999 - -0.7

Or see this region's nucleotide sequence