Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0496 and PP_0497 are separated by 178 nucleotides PP_0497 and PP_0498 are separated by 11 nucleotides
PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770
_0496
PP_0497: PP_0497 - Transcriptional regulator, Cro/CI family, at 586,949 to 587,758
_0497
PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645
_0498
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 586.857 kb on + strand at 586.948 kb on + strand at 586.948 kb on + strand at 586.949 kb on - strand at 586.949 kb on - strand at 587.003 kb on - strand at 587.054 kb on + strand, within PP_0497 at 587.054 kb on + strand, within PP_0497 at 587.055 kb on - strand, within PP_0497 at 587.055 kb on - strand at 587.055 kb on - strand, within PP_0497 at 587.055 kb on - strand, within PP_0497 at 587.099 kb on - strand, within PP_0497 at 587.261 kb on + strand, within PP_0497 at 587.274 kb on - strand, within PP_0497 at 587.282 kb on + strand, within PP_0497 at 587.282 kb on + strand, within PP_0497 at 587.416 kb on - strand, within PP_0497 at 587.569 kb on - strand, within PP_0497 at 587.619 kb on - strand, within PP_0497 at 587.691 kb on + strand at 587.692 kb on - strand at 587.692 kb on - strand at 587.756 kb on + strand at 587.756 kb on + strand at 587.756 kb on + strand at 587.762 kb on + strand at 587.763 kb on - strand at 587.771 kb on + strand at 587.771 kb on + strand at 587.832 kb on + strand at 587.925 kb on + strand, within PP_0498 at 587.948 kb on + strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 588.030 kb on - strand, within PP_0498 at 588.047 kb on - strand, within PP_0498 at 588.047 kb on - strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.187 kb on + strand, within PP_0498 at 588.187 kb on + strand, within PP_0498 at 588.188 kb on - strand, within PP_0498 at 588.225 kb on + strand, within PP_0498 at 588.225 kb on + strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.231 kb on + strand, within PP_0498 at 588.231 kb on + strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.250 kb on - strand, within PP_0498 at 588.257 kb on - strand, within PP_0498 at 588.413 kb on + strand, within PP_0498 at 588.487 kb on - strand, within PP_0498 at 588.493 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.519 kb on - strand, within PP_0498 at 588.625 kb on + strand at 588.625 kb on + strand at 588.970 kb on + strand at 588.971 kb on - strand at 588.971 kb on - strand at 589.005 kb on + strand at 589.006 kb on - strand at 589.006 kb on - strand at 589.018 kb on - strand at 589.130 kb on + strand at 589.274 kb on - strand at 589.289 kb on + strand at 589.290 kb on - strand at 589.300 kb on + strand at 589.300 kb on + strand at 589.322 kb on - strand at 589.342 kb on + strand at 589.342 kb on + strand at 589.441 kb on + strand at 589.490 kb on + strand at 589.490 kb on + strand at 589.491 kb on - strand at 589.491 kb on - strand at 589.492 kb on + strand at 589.492 kb on + strand at 589.509 kb on - strand at 589.509 kb on - strand at 589.516 kb on + strand at 589.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 586,857 + -0.7 586,948 + +1.1 586,948 + +2.1 586,949 - +1.7 586,949 - +1.2 587,003 - -0.8 587,054 + PP_0497 0.13 +0.8 587,054 + PP_0497 0.13 -1.7 587,055 - PP_0497 0.13 +0.2 587,055 - +3.3 587,055 - PP_0497 0.13 -2.5 587,055 - PP_0497 0.13 +1.2 587,099 - PP_0497 0.19 +1.4 587,261 + PP_0497 0.39 +0.5 587,274 - PP_0497 0.40 -1.1 587,282 + PP_0497 0.41 -1.0 587,282 + PP_0497 0.41 -2.8 587,416 - PP_0497 0.58 -1.5 587,569 - PP_0497 0.77 +0.5 587,619 - PP_0497 0.83 -0.9 587,691 + +1.8 587,692 - -0.5 587,692 - -0.9 587,756 + -1.5 587,756 + +0.8 587,756 + +0.1 587,762 + +0.9 587,763 - +0.0 587,771 + +0.0 587,771 + -0.8 587,832 + +1.1 587,925 + PP_0498 0.18 -2.0 587,948 + PP_0498 0.20 +0.1 587,949 - PP_0498 0.20 -1.5 587,949 - PP_0498 0.20 -2.5 587,949 - PP_0498 0.20 -0.6 588,030 - PP_0498 0.30 -1.1 588,047 - PP_0498 0.32 -2.8 588,047 - PP_0498 0.32 +0.1 588,049 + PP_0498 0.32 -0.4 588,049 + PP_0498 0.32 -0.2 588,049 + PP_0498 0.32 -2.5 588,050 - PP_0498 0.32 +0.2 588,050 - PP_0498 0.32 -2.4 588,050 - PP_0498 0.32 -2.2 588,078 + PP_0498 0.35 -0.0 588,078 + PP_0498 0.35 +0.1 588,078 + PP_0498 0.35 -0.2 588,078 + PP_0498 0.35 -0.1 588,078 + PP_0498 0.35 -2.7 588,078 + PP_0498 0.35 +0.2 588,079 - PP_0498 0.35 +1.0 588,079 - PP_0498 0.35 -1.6 588,079 - PP_0498 0.35 -0.8 588,080 + PP_0498 0.35 +0.7 588,080 + PP_0498 0.35 -1.0 588,080 + PP_0498 0.35 -0.1 588,080 + PP_0498 0.35 +0.2 588,080 + PP_0498 0.35 +0.9 588,080 + PP_0498 0.35 -1.1 588,080 + PP_0498 0.35 +0.3 588,081 - PP_0498 0.36 -2.7 588,081 - PP_0498 0.36 +1.1 588,081 - PP_0498 0.36 -0.3 588,081 - PP_0498 0.36 -2.5 588,081 - PP_0498 0.36 -1.9 588,084 + PP_0498 0.36 -1.3 588,084 + PP_0498 0.36 -1.6 588,084 + PP_0498 0.36 -1.9 588,085 - PP_0498 0.36 +1.3 588,085 - PP_0498 0.36 -0.9 588,085 - PP_0498 0.36 -2.3 588,085 - PP_0498 0.36 -1.6 588,085 - PP_0498 0.36 -2.9 588,085 - PP_0498 0.36 -2.0 588,187 + PP_0498 0.48 -1.9 588,187 + PP_0498 0.48 -0.5 588,188 - PP_0498 0.48 -0.3 588,225 + PP_0498 0.52 +0.2 588,225 + PP_0498 0.52 -0.2 588,226 - PP_0498 0.52 -1.1 588,226 - PP_0498 0.52 -2.4 588,226 - PP_0498 0.52 -0.8 588,231 + PP_0498 0.53 +0.3 588,231 + PP_0498 0.53 -0.8 588,232 - PP_0498 0.53 -1.6 588,232 - PP_0498 0.53 +1.5 588,232 - PP_0498 0.53 -0.1 588,232 - PP_0498 0.53 +0.2 588,232 - PP_0498 0.53 -0.9 588,250 - PP_0498 0.55 +1.9 588,257 - PP_0498 0.56 -2.3 588,413 + PP_0498 0.73 +1.2 588,487 - PP_0498 0.82 -2.6 588,493 + PP_0498 0.83 +1.2 588,518 + PP_0498 0.85 -1.4 588,518 + PP_0498 0.85 -0.4 588,518 + PP_0498 0.85 -3.2 588,519 - PP_0498 0.86 -1.5 588,625 + +0.2 588,625 + +3.2 588,970 + -0.5 588,971 - -2.9 588,971 - +1.5 589,005 + +0.9 589,006 - -2.4 589,006 - -0.7 589,018 - -0.0 589,130 + +0.3 589,274 - -1.3 589,289 + +0.0 589,290 - +1.5 589,300 + +2.1 589,300 + -1.8 589,322 - -1.5 589,342 + +0.0 589,342 + -0.1 589,441 + +2.7 589,490 + +4.3 589,490 + +0.3 589,491 - -1.8 589,491 - +1.5 589,492 + +0.0 589,492 + -0.6 589,509 - -0.5 589,509 - -1.5 589,516 + -0.1 589,517 - +1.5
Or see this region's nucleotide sequence