Strain Fitness in Pseudomonas putida KT2440 around PP_0302

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0300 and PP_0301 are separated by 99 nucleotidesPP_0301 and PP_0302 are separated by 10 nucleotidesPP_0302 and PP_0303 are separated by 166 nucleotides PP_0300: PP_0300 - putative metallopeptidase, at 360,350 to 361,936 _0300 PP_0301: PP_0301 - betainyl-CoA thiolase, at 362,036 to 362,506 _0301 PP_0302: PP_0302 - L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data), at 362,517 to 363,482 _0302 PP_0303: PP_0303 - dehydrocarnitine cleavage enzyme, at 363,649 to 364,533 _0303 Position (kb) 362 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 361.538 kb on - strand, within PP_0300at 361.628 kb on + strand, within PP_0300at 361.738 kb on - strand, within PP_0300at 361.805 kb on - strandat 361.854 kb on + strandat 361.855 kb on - strandat 361.917 kb on - strandat 361.928 kb on + strandat 361.957 kb on + strandat 361.958 kb on - strandat 362.000 kb on + strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.056 kb on + strandat 362.066 kb on - strandat 362.067 kb on + strandat 362.068 kb on - strandat 362.068 kb on - strandat 362.100 kb on - strand, within PP_0301at 362.174 kb on + strand, within PP_0301at 362.175 kb on - strand, within PP_0301at 362.232 kb on + strand, within PP_0301at 362.233 kb on - strand, within PP_0301at 362.233 kb on - strand, within PP_0301at 362.313 kb on + strand, within PP_0301at 362.314 kb on - strand, within PP_0301at 362.321 kb on - strand, within PP_0301at 362.409 kb on + strand, within PP_0301at 362.409 kb on + strand, within PP_0301at 362.427 kb on + strand, within PP_0301at 362.454 kb on + strand, within PP_0301at 362.519 kb on - strandat 362.519 kb on - strandat 362.695 kb on + strand, within PP_0302at 362.695 kb on + strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.969 kb on - strand, within PP_0302at 362.969 kb on - strand, within PP_0302at 362.991 kb on - strand, within PP_0302at 362.991 kb on - strand, within PP_0302at 363.044 kb on - strand, within PP_0302at 363.044 kb on - strand, within PP_0302at 363.100 kb on + strand, within PP_0302at 363.100 kb on + strand, within PP_0302at 363.101 kb on - strand, within PP_0302at 363.101 kb on - strand, within PP_0302at 363.482 kb on + strandat 363.482 kb on + strandat 363.482 kb on + strandat 363.483 kb on - strandat 363.483 kb on - strandat 363.483 kb on - strandat 363.499 kb on - strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.509 kb on - strandat 363.509 kb on - strandat 363.509 kb on - strandat 363.780 kb on - strand, within PP_0303at 363.780 kb on - strand, within PP_0303at 363.780 kb on - strand, within PP_0303at 364.109 kb on + strand, within PP_0303at 364.109 kb on + strand, within PP_0303at 364.110 kb on - strand, within PP_0303at 364.110 kb on - strand, within PP_0303at 364.426 kb on + strand, within PP_0303

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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361,538 - PP_0300 0.75 -0.1
361,628 + PP_0300 0.81 -2.1
361,738 - PP_0300 0.87 +0.7
361,805 - -1.7
361,854 + +0.1
361,855 - -1.3
361,917 - -0.0
361,928 + -1.0
361,957 + -0.7
361,958 - -0.3
362,000 + +2.0
362,005 - +1.2
362,005 - +0.4
362,005 - -2.5
362,005 - +0.4
362,056 + +0.3
362,066 - +0.3
362,067 + -0.7
362,068 - +1.2
362,068 - +0.7
362,100 - PP_0301 0.14 +2.5
362,174 + PP_0301 0.29 +0.8
362,175 - PP_0301 0.30 +1.9
362,232 + PP_0301 0.42 -0.4
362,233 - PP_0301 0.42 +3.1
362,233 - PP_0301 0.42 -1.2
362,313 + PP_0301 0.59 +0.1
362,314 - PP_0301 0.59 -0.2
362,321 - PP_0301 0.61 -2.0
362,409 + PP_0301 0.79 +1.3
362,409 + PP_0301 0.79 +1.7
362,427 + PP_0301 0.83 -1.4
362,454 + PP_0301 0.89 -0.9
362,519 - +0.8
362,519 - -1.2
362,695 + PP_0302 0.18 -0.7
362,695 + PP_0302 0.18 -0.5
362,696 - PP_0302 0.19 -2.1
362,696 - PP_0302 0.19 -0.7
362,771 + PP_0302 0.26 +1.5
362,771 + PP_0302 0.26 +1.0
362,773 + PP_0302 0.27 -1.5
362,773 + PP_0302 0.27 +1.2
362,773 + PP_0302 0.27 -1.2
362,774 - PP_0302 0.27 +0.9
362,774 - PP_0302 0.27 +1.0
362,774 - PP_0302 0.27 -0.7
362,774 - PP_0302 0.27 +0.9
362,774 - PP_0302 0.27 -1.0
362,774 - PP_0302 0.27 -0.5
362,777 + PP_0302 0.27 -0.3
362,777 + PP_0302 0.27 +0.6
362,777 + PP_0302 0.27 +0.6
362,778 - PP_0302 0.27 +0.5
362,778 - PP_0302 0.27 +0.7
362,778 - PP_0302 0.27 +0.7
362,778 - PP_0302 0.27 -0.2
362,778 - PP_0302 0.27 -0.4
362,969 - PP_0302 0.47 -2.6
362,969 - PP_0302 0.47 -0.3
362,991 - PP_0302 0.49 +2.0
362,991 - PP_0302 0.49 -0.2
363,044 - PP_0302 0.55 +0.8
363,044 - PP_0302 0.55 +4.2
363,100 + PP_0302 0.60 +1.4
363,100 + PP_0302 0.60 +0.8
363,101 - PP_0302 0.60 +2.4
363,101 - PP_0302 0.60 +0.6
363,482 + -0.8
363,482 + -0.6
363,482 + -0.4
363,483 - -0.5
363,483 - +1.8
363,483 - -1.0
363,499 - +0.6
363,508 + -0.3
363,508 + -0.5
363,508 + -2.5
363,508 + +2.7
363,508 + +0.0
363,509 - +1.2
363,509 - -0.6
363,509 - +0.0
363,780 - PP_0303 0.15 +0.1
363,780 - PP_0303 0.15 -0.9
363,780 - PP_0303 0.15 +1.5
364,109 + PP_0303 0.52 -0.8
364,109 + PP_0303 0.52 -0.6
364,110 - PP_0303 0.52 +0.3
364,110 - PP_0303 0.52 -2.9
364,426 + PP_0303 0.88 +0.3

Or see this region's nucleotide sequence