Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3912 and PP_3913 are separated by 8 nucleotides PP_3913 and PP_5645 are separated by 49 nucleotides PP_5645 and PP_3914 are separated by 165 nucleotides PP_3914 and PP_5646 overlap by 4 nucleotides PP_5646 and PP_3915 overlap by 4 nucleotides
PP_3912: PP_3912 - DNA-cytosine methyltransferase, at 4,420,251 to 4,421,912
_3912
PP_3913: PP_3913 - protein of unknown function, at 4,421,921 to 4,422,598
_3913
PP_5645: PP_5645 - conserved protein of unknown function, at 4,422,648 to 4,422,947
_5645
PP_3914: PP_3914 - conserved protein of unknown function, at 4,423,113 to 4,423,496
_3914
PP_5646: PP_5646 - protein of unknown function, at 4,423,493 to 4,423,771
_5646
PP_3915: PP_3915 - conserved protein of unknown function, at 4,423,768 to 4,424,091
_3915
Position (kb) 4422
4423 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4421.664 kb on + strand, within PP_3912 at 4421.664 kb on + strand, within PP_3912 at 4421.664 kb on + strand, within PP_3912 at 4421.664 kb on + strand, within PP_3912 at 4421.664 kb on + strand, within PP_3912 at 4421.665 kb on - strand, within PP_3912 at 4421.665 kb on - strand, within PP_3912 at 4421.665 kb on - strand, within PP_3912 at 4421.665 kb on - strand, within PP_3912 at 4421.827 kb on - strand at 4421.916 kb on + strand at 4422.073 kb on + strand, within PP_3913 at 4422.074 kb on - strand, within PP_3913 at 4422.074 kb on - strand, within PP_3913 at 4422.089 kb on + strand, within PP_3913 at 4422.090 kb on - strand, within PP_3913 at 4422.131 kb on - strand, within PP_3913 at 4422.247 kb on + strand, within PP_3913 at 4422.247 kb on + strand, within PP_3913 at 4422.248 kb on - strand at 4422.248 kb on - strand at 4422.335 kb on - strand, within PP_3913 at 4422.335 kb on - strand, within PP_3913 at 4422.365 kb on + strand, within PP_3913 at 4422.365 kb on + strand, within PP_3913 at 4422.366 kb on - strand, within PP_3913 at 4422.438 kb on - strand, within PP_3913 at 4422.529 kb on + strand, within PP_3913 at 4422.529 kb on + strand, within PP_3913 at 4422.529 kb on + strand, within PP_3913 at 4422.529 kb on + strand, within PP_3913 at 4422.634 kb on - strand at 4422.693 kb on - strand, within PP_5645 at 4422.714 kb on + strand, within PP_5645 at 4422.749 kb on + strand, within PP_5645 at 4422.750 kb on - strand, within PP_5645 at 4422.799 kb on + strand, within PP_5645 at 4422.799 kb on + strand, within PP_5645 at 4422.800 kb on - strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand, within PP_5645 at 4422.859 kb on + strand at 4422.859 kb on + strand, within PP_5645 at 4422.860 kb on - strand, within PP_5645 at 4422.860 kb on - strand, within PP_5645 at 4422.860 kb on - strand, within PP_5645 at 4422.860 kb on - strand, within PP_5645 at 4422.860 kb on - strand, within PP_5645 at 4422.925 kb on + strand at 4422.925 kb on + strand at 4422.925 kb on + strand at 4422.926 kb on - strand at 4422.926 kb on - strand at 4422.947 kb on + strand at 4422.947 kb on + strand at 4422.947 kb on + strand at 4422.948 kb on - strand at 4422.981 kb on + strand at 4423.024 kb on + strand at 4423.024 kb on + strand at 4423.044 kb on - strand at 4423.077 kb on + strand at 4423.078 kb on - strand at 4423.183 kb on + strand, within PP_3914 at 4423.183 kb on + strand, within PP_3914 at 4423.406 kb on + strand, within PP_3914 at 4423.406 kb on + strand, within PP_3914 at 4423.406 kb on + strand, within PP_3914 at 4423.407 kb on - strand, within PP_3914 at 4423.407 kb on - strand, within PP_3914 at 4423.407 kb on - strand, within PP_3914 at 4423.407 kb on - strand, within PP_3914 at 4423.432 kb on - strand, within PP_3914 at 4423.455 kb on + strand, within PP_3914 at 4423.455 kb on + strand, within PP_3914 at 4423.455 kb on + strand, within PP_3914 at 4423.456 kb on - strand, within PP_3914 at 4423.552 kb on + strand, within PP_5646 at 4423.553 kb on - strand, within PP_5646 at 4423.553 kb on - strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.563 kb on + strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.564 kb on - strand, within PP_5646 at 4423.594 kb on + strand, within PP_5646 at 4423.594 kb on + strand, within PP_5646 at 4423.595 kb on - strand, within PP_5646 at 4423.607 kb on + strand, within PP_5646 at 4423.607 kb on + strand, within PP_5646 at 4423.607 kb on + strand, within PP_5646 at 4423.641 kb on + strand, within PP_5646 at 4423.641 kb on + strand, within PP_5646 at 4423.641 kb on + strand, within PP_5646 at 4423.642 kb on - strand, within PP_5646 at 4423.642 kb on - strand, within PP_5646 at 4423.642 kb on - strand, within PP_5646 at 4423.720 kb on + strand, within PP_5646 at 4423.760 kb on + strand at 4423.760 kb on + strand at 4423.761 kb on - strand at 4423.761 kb on - strand at 4423.942 kb on + strand, within PP_3915 at 4423.942 kb on + strand, within PP_3915 at 4423.942 kb on + strand, within PP_3915 at 4423.943 kb on - strand, within PP_3915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,421,664 + PP_3912 0.85 -1.1 4,421,664 + PP_3912 0.85 -1.9 4,421,664 + PP_3912 0.85 -2.6 4,421,664 + PP_3912 0.85 -0.8 4,421,664 + PP_3912 0.85 +0.8 4,421,665 - PP_3912 0.85 -0.7 4,421,665 - PP_3912 0.85 -0.4 4,421,665 - PP_3912 0.85 -0.1 4,421,665 - PP_3912 0.85 -0.5 4,421,827 - +0.9 4,421,916 + -1.8 4,422,073 + PP_3913 0.22 -0.1 4,422,074 - PP_3913 0.23 -2.0 4,422,074 - PP_3913 0.23 +0.1 4,422,089 + PP_3913 0.25 +0.2 4,422,090 - PP_3913 0.25 +0.2 4,422,131 - PP_3913 0.31 -1.4 4,422,247 + PP_3913 0.48 +1.2 4,422,247 + PP_3913 0.48 +0.0 4,422,248 - +0.8 4,422,248 - +1.2 4,422,335 - PP_3913 0.61 -0.3 4,422,335 - PP_3913 0.61 +0.8 4,422,365 + PP_3913 0.65 -1.0 4,422,365 + PP_3913 0.65 +0.2 4,422,366 - PP_3913 0.66 -0.3 4,422,438 - PP_3913 0.76 -0.3 4,422,529 + PP_3913 0.90 +0.5 4,422,529 + PP_3913 0.90 +0.6 4,422,529 + PP_3913 0.90 -0.3 4,422,529 + PP_3913 0.90 +0.2 4,422,634 - +0.2 4,422,693 - PP_5645 0.15 -0.2 4,422,714 + PP_5645 0.22 +0.9 4,422,749 + PP_5645 0.34 -0.9 4,422,750 - PP_5645 0.34 +0.0 4,422,799 + PP_5645 0.50 -0.0 4,422,799 + PP_5645 0.50 +0.1 4,422,800 - PP_5645 0.51 +3.0 4,422,859 + PP_5645 0.70 +0.2 4,422,859 + PP_5645 0.70 +0.2 4,422,859 + PP_5645 0.70 +1.1 4,422,859 + PP_5645 0.70 +2.1 4,422,859 + PP_5645 0.70 -0.3 4,422,859 + PP_5645 0.70 +1.8 4,422,859 + +0.2 4,422,859 + PP_5645 0.70 +0.9 4,422,860 - PP_5645 0.71 +0.6 4,422,860 - PP_5645 0.71 +1.3 4,422,860 - PP_5645 0.71 -0.5 4,422,860 - PP_5645 0.71 +0.4 4,422,860 - PP_5645 0.71 +1.0 4,422,925 + -0.3 4,422,925 + +0.9 4,422,925 + -0.7 4,422,926 - +0.7 4,422,926 - -1.6 4,422,947 + +0.1 4,422,947 + -1.6 4,422,947 + -1.0 4,422,948 - +0.1 4,422,981 + -0.4 4,423,024 + +0.4 4,423,024 + -2.1 4,423,044 - -0.1 4,423,077 + -1.8 4,423,078 - +4.3 4,423,183 + PP_3914 0.18 +0.3 4,423,183 + PP_3914 0.18 +0.4 4,423,406 + PP_3914 0.76 -0.5 4,423,406 + PP_3914 0.76 +0.6 4,423,406 + PP_3914 0.76 +1.3 4,423,407 - PP_3914 0.77 -3.9 4,423,407 - PP_3914 0.77 -1.9 4,423,407 - PP_3914 0.77 -0.0 4,423,407 - PP_3914 0.77 +0.4 4,423,432 - PP_3914 0.83 +1.5 4,423,455 + PP_3914 0.89 -1.8 4,423,455 + PP_3914 0.89 +0.9 4,423,455 + PP_3914 0.89 +0.1 4,423,456 - PP_3914 0.89 -0.0 4,423,552 + PP_5646 0.21 -0.2 4,423,553 - PP_5646 0.22 +0.4 4,423,553 - PP_5646 0.22 +0.4 4,423,563 + PP_5646 0.25 +0.0 4,423,563 + PP_5646 0.25 +0.0 4,423,563 + PP_5646 0.25 +0.5 4,423,563 + PP_5646 0.25 +0.2 4,423,563 + PP_5646 0.25 +1.0 4,423,563 + PP_5646 0.25 +0.2 4,423,563 + PP_5646 0.25 -1.5 4,423,564 - PP_5646 0.25 +0.6 4,423,564 - PP_5646 0.25 +0.4 4,423,564 - PP_5646 0.25 +0.3 4,423,564 - PP_5646 0.25 +0.3 4,423,564 - PP_5646 0.25 -0.5 4,423,564 - PP_5646 0.25 +1.0 4,423,564 - PP_5646 0.25 -0.8 4,423,564 - PP_5646 0.25 +0.1 4,423,594 + PP_5646 0.36 +0.2 4,423,594 + PP_5646 0.36 +0.9 4,423,595 - PP_5646 0.37 -0.2 4,423,607 + PP_5646 0.41 +0.6 4,423,607 + PP_5646 0.41 +0.7 4,423,607 + PP_5646 0.41 +2.1 4,423,641 + PP_5646 0.53 -0.5 4,423,641 + PP_5646 0.53 +0.7 4,423,641 + PP_5646 0.53 -0.1 4,423,642 - PP_5646 0.53 +0.4 4,423,642 - PP_5646 0.53 -0.8 4,423,642 - PP_5646 0.53 -0.1 4,423,720 + PP_5646 0.81 +0.0 4,423,760 + -0.0 4,423,760 + +1.7 4,423,761 - -0.2 4,423,761 - -0.9 4,423,942 + PP_3915 0.54 +0.9 4,423,942 + PP_3915 0.54 -0.1 4,423,942 + PP_3915 0.54 -0.5 4,423,943 - PP_3915 0.54 -0.7
Or see this region's nucleotide sequence