Strain Fitness in Pseudomonas putida KT2440 around PP_1306

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
1,491,826	+		PP_1304	0.78	+1.8
1,492,039	+		PP_1304	0.89	+1.8
1,492,039	+		PP_1304	0.89	+0.5
1,492,091	-				+1.5
1,492,237	+				+0.7
1,492,238	-				+0.3
1,492,238	-				-0.6
1,492,284	-				+1.4
1,492,335	+				+0.0
1,492,336	-				-2.3
1,492,541	+		PP_1305	0.78	-0.1
1,492,569	+		PP_1305	0.89	-1.5
1,492,705	+				+0.5
1,492,705	+				-0.8
1,492,706	-				-0.1
1,492,706	-				-0.6
1,492,947	+		PP_1306	0.16	-0.1
1,492,947	+		PP_1306	0.16	+0.9
1,492,947	+				+0.8
1,492,948	-		PP_1306	0.16	+0.6
1,492,948	-				+0.8
1,492,948	-		PP_1306	0.16	-0.9
1,493,019	+		PP_1306	0.19	+3.4
1,493,135	+		PP_1306	0.24	+2.0
1,493,136	-		PP_1306	0.24	-0.2
1,493,136	-		PP_1306	0.24	-0.6
1,493,146	-		PP_1306	0.24	+0.5
1,493,165	-		PP_1306	0.25	-1.1
1,493,252	+		PP_1306	0.29	+0.0
1,493,318	+		PP_1306	0.32	+1.4
1,493,318	+		PP_1306	0.32	-1.2
1,493,318	+		PP_1306	0.32	+0.1
1,493,319	-		PP_1306	0.32	+0.4
1,493,319	-		PP_1306	0.32	-0.8
1,493,360	+		PP_1306	0.34	+0.6
1,493,360	+		PP_1306	0.34	+0.8
1,493,361	-		PP_1306	0.34	+0.0
1,493,424	+		PP_1306	0.36	+0.0
1,493,424	+		PP_1306	0.36	+0.8
1,493,425	-		PP_1306	0.36	-0.4
1,493,453	+		PP_1306	0.38	+0.3
1,493,454	-		PP_1306	0.38	-0.9
1,493,454	-		PP_1306	0.38	+0.9
1,493,454	-		PP_1306	0.38	+0.8
1,493,507	-		PP_1306	0.40	+0.2
1,493,544	+		PP_1306	0.42	+1.2
1,493,544	+		PP_1306	0.42	+1.5
1,493,579	+		PP_1306	0.43	-0.1
1,493,580	-		PP_1306	0.43	+0.7
1,493,624	-		PP_1306	0.45	+2.2
1,493,661	+		PP_1306	0.47	-1.7
1,493,661	+		PP_1306	0.47	+0.1
1,493,663	+		PP_1306	0.47	-1.4
1,493,663	+		PP_1306	0.47	-0.5
1,493,663	+		PP_1306	0.47	+0.1
1,493,663	+		PP_1306	0.47	-0.4
1,493,664	-		PP_1306	0.47	-0.1
1,493,664	-		PP_1306	0.47	-0.8
1,493,664	-		PP_1306	0.47	+0.1
1,493,664	-		PP_1306	0.47	+0.6
1,493,664	-		PP_1306	0.47	+0.6
1,493,664	-		PP_1306	0.47	+0.2
1,493,673	+		PP_1306	0.47	-0.3
1,493,673	+		PP_1306	0.47	-2.4
1,493,674	-		PP_1306	0.47	-1.7
1,493,674	-		PP_1306	0.47	-0.4
1,493,828	+		PP_1306	0.54	-0.1
1,493,828	+		PP_1306	0.54	+1.2
1,493,829	-		PP_1306	0.54	+0.0
1,493,829	-		PP_1306	0.54	+0.8
1,493,829	-		PP_1306	0.54	-0.9
1,493,829	-		PP_1306	0.54	+0.5
1,493,829	-		PP_1306	0.54	-1.7
1,493,829	-		PP_1306	0.54	+0.2
1,493,829	-		PP_1306	0.54	-0.4
1,493,830	+		PP_1306	0.54	+3.8
1,493,831	-		PP_1306	0.54	+0.2
1,493,831	-		PP_1306	0.54	-2.1
1,493,876	+		PP_1306	0.56	+0.2
1,493,876	+		PP_1306	0.56	+0.1
1,493,877	-		PP_1306	0.56	-0.8
1,493,877	-		PP_1306	0.56	-0.6
1,493,920	+		PP_1306	0.58	+3.1
1,493,920	+		PP_1306	0.58	-2.0
1,493,920	+		PP_1306	0.58	-0.3
1,493,921	-		PP_1306	0.58	+0.6
1,493,921	-		PP_1306	0.58	-0.7
1,494,044	+		PP_1306	0.64	+0.6
1,494,045	-		PP_1306	0.64	+0.6
1,494,045	-		PP_1306	0.64	+1.8
1,494,045	-		PP_1306	0.64	+0.7
1,494,045	-		PP_1306	0.64	-0.8
1,494,048	+		PP_1306	0.64	-0.7
1,494,049	-		PP_1306	0.64	+0.3
1,494,049	-		PP_1306	0.64	+0.2
1,494,049	-		PP_1306	0.64	+0.6
1,494,049	-		PP_1306	0.64	-0.1
1,494,223	+		PP_1306	0.72	-3.3
1,494,223	+		PP_1306	0.72	+5.2
1,494,224	-		PP_1306	0.72	-0.0
1,494,224	-		PP_1306	0.72	+0.0
1,494,287	-		PP_1306	0.74	-1.3
1,494,287	-		PP_1306	0.74	-0.7
1,494,293	+		PP_1306	0.75	+3.8
1,494,340	+		PP_1306	0.77	-2.1
1,494,413	+		PP_1306	0.80	-0.4
1,494,413	+		PP_1306	0.80	+0.5
1,494,413	+		PP_1306	0.80	+0.9
1,494,414	-		PP_1306	0.80	-0.7
1,494,464	+		PP_1306	0.82	+1.3
1,494,465	-		PP_1306	0.82	+0.3
1,494,465	-		PP_1306	0.82	+0.5
1,494,572	-		PP_1306	0.87	-0.6
1,494,581	-		PP_1306	0.87	+0.2
1,494,583	-		PP_1306	0.87	-1.3
1,494,614	+		PP_1306	0.89	+0.7
1,494,614	+		PP_1306	0.89	+0.2
1,494,614	+		PP_1306	0.89	+2.0
1,494,627	-		PP_1306	0.89	+1.3
1,494,678	+				+0.5
1,494,679	-				+0.4
1,494,733	+				+0.3
1,494,793	-				-1.1
1,494,793	-				+1.1
1,494,813	-				-0.9
1,494,813	-				-0.2
1,494,830	+				-1.0
1,494,831	-				-0.0
1,494,833	+				+1.6
1,494,833	+				+0.1
1,494,834	-				+1.0
1,494,837	+				+0.2
1,494,837	+				-1.1
1,494,837	+				-1.0
1,494,855	-				+0.0
1,494,871	+				+0.2
1,494,872	-				+2.1
1,494,887	-				-0.5
1,494,890	+				-1.1
1,494,890	+				+1.5
1,494,890	+				-0.9
1,494,890	+				+0.9
1,494,932	+				+0.8
1,494,933	-				-0.4
1,494,970	+				+0.4
1,494,970	+				-2.9
1,494,971	-				-0.1
1,495,032	+		PP_1307	0.14	-0.5
1,495,032	+		PP_1307	0.14	-0.5
1,495,314	-		PP_1307	0.73	-0.1
1,495,342	+		PP_1307	0.79	-0.5
1,495,342	+		PP_1307	0.79	+1.0
1,495,342	+		PP_1307	0.79	+0.2
1,495,469	+				-0.5
1,495,470	-				-0.5
1,495,496	+				-0.3
1,495,497	-				-0.5
1,495,497	-				+0.2
1,495,497	-				-0.3
1,495,507	+				-0.4
1,495,539	+				+0.4
1,495,539	+				+0.3
1,495,539	+				-1.2
1,495,540	-				-0.9
1,495,540	-				+6.0
1,495,540	-				+1.2
1,495,545	+				-0.1
1,495,546	-				+0.8
1,495,626	+				+1.3
1,495,626	+				-1.4
1,495,626	+				+1.1
1,495,627	-				+0.8
1,495,627	-				-0.1
1,495,627	-				-0.0
1,495,669	-				-2.6
1,495,669	-				-0.5
1,495,679	+				-0.4
1,495,683	+				+0.2
1,495,683	+				+0.5
1,495,683	+				-0.3
1,495,683	+				+0.6
1,495,684	-				-0.2
1,495,684	-				+0.3
1,495,684	-				-0.2
1,495,684	-				+0.4
1,495,704	+		PP_1308	0.11	-0.8
1,495,746	+		PP_1308	0.15	+0.4
1,495,747	-		PP_1308	0.15	-0.7
1,495,850	+		PP_1308	0.23	+0.8
1,495,850	+		PP_1308	0.23	+0.7
1,495,850	+		PP_1308	0.23	+0.5