Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0813 and PP_0814 are separated by 3 nucleotides PP_0814 and PP_0815 overlap by 1 nucleotides PP_0815 and PP_0816 are separated by 11 nucleotides
PP_0813: PP_0813 - cytochrome bo terminal oxidase subunit I, at 951,170 to 953,188
_0813
PP_0814: PP_0814 - cytochrome bo terminal oxidase subunit III, at 953,192 to 953,815
_0814
PP_0815: PP_0815 - cytochrome bo terminal oxidase subunit IV, at 953,815 to 954,147
_0815
PP_0816: PP_0816 - protoheme IX farnesyltransferase, at 954,159 to 955,046
_0816
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1 at 953.076 kb on - strand at 953.119 kb on + strand at 954.150 kb on + strand at 954.150 kb on + strand at 955.035 kb on + strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.145 kb on + strand at 955.145 kb on + strand at 955.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 953,076 - -0.6 953,119 + -1.7 954,150 + -1.5 954,150 + -1.0 955,035 + -0.3 955,036 - -0.6 955,036 - -2.4 955,036 - -1.9 955,036 - -1.0 955,145 + -0.3 955,145 + +1.0 955,145 + +0.0
Or see this region's nucleotide sequence