Strain Fitness in Pseudomonas putida KT2440 around PP_0587

Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0586 and PP_0587 are separated by 52 nucleotidesPP_0587 and PP_0588 are separated by 145 nucleotidesPP_0588 and PP_0589 are separated by 107 nucleotides PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246 _0586 PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685 _0587 PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028 _0588 PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317 _0589 Position (kb) 686 687Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 685.312 kb on - strand, within PP_0586at 685.451 kb on - strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.464 kb on + strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.465 kb on - strand, within PP_0586at 685.498 kb on + strand, within PP_0586at 685.499 kb on - strand, within PP_0586at 685.499 kb on - strand, within PP_0586at 685.540 kb on + strand, within PP_0586at 685.633 kb on + strand, within PP_0586at 685.633 kb on + strand, within PP_0586at 685.634 kb on - strand, within PP_0586at 685.634 kb on - strand, within PP_0586at 685.695 kb on + strand, within PP_0586at 685.722 kb on + strand, within PP_0586at 685.722 kb on + strand, within PP_0586at 685.723 kb on - strand, within PP_0586at 685.734 kb on + strand, within PP_0586at 685.734 kb on + strand, within PP_0586at 685.735 kb on - strand, within PP_0586at 685.735 kb on - strand, within PP_0586at 685.737 kb on + strand, within PP_0586at 685.738 kb on - strand, within PP_0586at 685.849 kb on + strand, within PP_0586at 686.016 kb on + strandat 686.133 kb on + strandat 686.134 kb on - strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.227 kb on + strandat 686.228 kb on - strandat 686.228 kb on - strandat 686.228 kb on - strandat 686.303 kb on + strandat 686.336 kb on + strandat 686.336 kb on + strandat 686.358 kb on - strand, within PP_0587at 686.410 kb on + strand, within PP_0587at 686.410 kb on + strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.411 kb on - strand, within PP_0587at 686.412 kb on + strandat 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.412 kb on + strand, within PP_0587at 686.413 kb on - strand, within PP_0587at 686.538 kb on - strand, within PP_0587at 686.593 kb on + strand, within PP_0587at 686.600 kb on + strand, within PP_0587at 686.601 kb on - strand, within PP_0587at 686.601 kb on - strand, within PP_0587at 686.824 kb on - strandat 686.824 kb on - strandat 686.847 kb on + strandat 686.847 kb on + strandat 686.847 kb on + strandat 686.848 kb on - strandat 687.009 kb on - strandat 687.098 kb on + strandat 687.117 kb on - strandat 687.125 kb on - strandat 687.202 kb on + strandat 687.202 kb on + strandat 687.202 kb on + strandat 687.203 kb on - strandat 687.278 kb on - strandat 687.278 kb on - strand, within PP_0589at 687.294 kb on + strand, within PP_0589at 687.311 kb on - strand, within PP_0589at 687.363 kb on + strand, within PP_0589at 687.397 kb on + strand, within PP_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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685,312 - PP_0586 0.61 +1.5
685,451 - PP_0586 0.67 +1.2
685,464 + PP_0586 0.67 -1.4
685,464 + PP_0586 0.67 -0.4
685,464 + PP_0586 0.67 -0.5
685,465 - PP_0586 0.67 +0.1
685,465 - PP_0586 0.67 +0.5
685,465 - PP_0586 0.67 -0.7
685,498 + PP_0586 0.69 -0.9
685,499 - PP_0586 0.69 -0.4
685,499 - PP_0586 0.69 +0.1
685,540 + PP_0586 0.71 -1.0
685,633 + PP_0586 0.74 +0.1
685,633 + PP_0586 0.74 +0.7
685,634 - PP_0586 0.74 +0.6
685,634 - PP_0586 0.74 +0.7
685,695 + PP_0586 0.77 +0.6
685,722 + PP_0586 0.78 +0.6
685,722 + PP_0586 0.78 -0.2
685,723 - PP_0586 0.78 +1.0
685,734 + PP_0586 0.79 -0.1
685,734 + PP_0586 0.79 +0.3
685,735 - PP_0586 0.79 +0.7
685,735 - PP_0586 0.79 +1.8
685,737 + PP_0586 0.79 +0.4
685,738 - PP_0586 0.79 -0.3
685,849 + PP_0586 0.83 +0.5
686,016 + -0.5
686,133 + -0.8
686,134 - -0.0
686,227 + -0.9
686,227 + +0.2
686,227 + -0.1
686,227 + -0.4
686,228 - -0.3
686,228 - +0.5
686,228 - -0.4
686,303 + +0.1
686,336 + +0.5
686,336 + +4.9
686,358 - PP_0587 0.15 -0.1
686,410 + PP_0587 0.29 -1.0
686,410 + PP_0587 0.29 -1.4
686,411 - PP_0587 0.29 -0.3
686,411 - PP_0587 0.29 -0.8
686,411 - PP_0587 0.29 -1.3
686,412 + -1.6
686,412 + PP_0587 0.29 +0.7
686,412 + PP_0587 0.29 -0.0
686,412 + PP_0587 0.29 -0.2
686,412 + PP_0587 0.29 -1.1
686,412 + PP_0587 0.29 +1.2
686,413 - PP_0587 0.29 -1.3
686,538 - PP_0587 0.62 -0.6
686,593 + PP_0587 0.76 -0.1
686,600 + PP_0587 0.78 +0.9
686,601 - PP_0587 0.78 -1.1
686,601 - PP_0587 0.78 -0.6
686,824 - -0.5
686,824 - -0.5
686,847 + -2.4
686,847 + -0.1
686,847 + +0.2
686,848 - +0.9
687,009 - -0.4
687,098 + -1.2
687,117 - +1.1
687,125 - -1.0
687,202 + +0.5
687,202 + +0.5
687,202 + -0.2
687,203 - +0.3
687,278 - +0.7
687,278 - PP_0589 0.12 +0.2
687,294 + PP_0589 0.13 +0.1
687,311 - PP_0589 0.15 +0.4
687,363 + PP_0589 0.19 -0.9
687,397 + PP_0589 0.22 -1.5

Or see this region's nucleotide sequence