Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0537 and PP_0538 are separated by 182 nucleotides PP_0538 and PP_0539 are separated by 92 nucleotides PP_0539 and PP_0540 are separated by 20 nucleotides PP_0540 and PP_0541 are separated by 217 nucleotides
PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906
_0537
PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616
_0538
PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524
_0539
PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192
_0540
PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868
_0541
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 624.986 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 625.000 kb on - strand at 625.000 kb on - strand at 625.009 kb on + strand at 625.658 kb on - strand at 625.658 kb on - strand at 625.660 kb on - strand at 625.660 kb on - strand at 625.783 kb on - strand at 625.783 kb on - strand at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.804 kb on - strand, within PP_0539 at 625.816 kb on - strand, within PP_0539 at 625.844 kb on - strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.897 kb on - strand, within PP_0539 at 625.956 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.288 kb on + strand, within PP_0539 at 626.491 kb on + strand at 626.492 kb on - strand at 626.492 kb on - strand at 626.539 kb on - strand at 626.843 kb on + strand, within PP_0540 at 626.843 kb on + strand, within PP_0540 at 626.856 kb on + strand, within PP_0540 at 626.868 kb on - strand, within PP_0540 at 626.936 kb on + strand, within PP_0540 at 626.936 kb on + strand, within PP_0540 at 627.067 kb on + strand, within PP_0540 at 627.068 kb on - strand, within PP_0540 at 627.068 kb on - strand, within PP_0540 at 627.111 kb on - strand, within PP_0540 at 627.111 kb on - strand, within PP_0540 at 627.125 kb on + strand, within PP_0540 at 627.125 kb on + strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.149 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.218 kb on - strand at 627.218 kb on - strand at 627.271 kb on - strand at 627.272 kb on + strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.278 kb on + strand at 627.307 kb on - strand at 627.317 kb on + strand at 627.318 kb on - strand at 627.322 kb on + strand at 627.323 kb on - strand at 627.323 kb on - strand at 627.323 kb on - strand at 627.331 kb on - strand at 627.380 kb on + strand at 627.380 kb on + strand at 627.380 kb on + strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 624,986 + +0.7 624,999 + +0.7 624,999 + -0.4 624,999 + +0.4 625,000 - -0.8 625,000 - +0.8 625,009 + -0.1 625,658 - -0.2 625,658 - -1.2 625,660 - +0.7 625,660 - +1.4 625,783 - +0.1 625,783 - -1.1 625,803 + PP_0539 0.12 +2.8 625,803 + PP_0539 0.12 -2.0 625,803 + PP_0539 0.12 -0.1 625,804 - PP_0539 0.12 -0.6 625,816 - PP_0539 0.13 +0.7 625,844 - PP_0539 0.17 +0.2 625,896 + PP_0539 0.23 +0.6 625,896 + PP_0539 0.23 -1.1 625,896 + PP_0539 0.23 -0.7 625,896 + PP_0539 0.23 -1.7 625,897 - PP_0539 0.23 +0.8 625,956 + PP_0539 0.30 +0.4 626,079 + PP_0539 0.45 -0.9 626,079 + PP_0539 0.45 +0.6 626,079 + PP_0539 0.45 +1.2 626,079 + PP_0539 0.45 -0.0 626,079 + PP_0539 0.45 +2.8 626,079 + PP_0539 0.45 +0.7 626,079 + PP_0539 0.45 +1.5 626,080 - PP_0539 0.45 +0.7 626,080 - PP_0539 0.45 +0.4 626,080 - PP_0539 0.45 -0.7 626,080 - PP_0539 0.45 +2.2 626,080 - PP_0539 0.45 -0.9 626,080 - PP_0539 0.45 -0.4 626,288 + PP_0539 0.71 -0.4 626,491 + -0.2 626,492 - -0.9 626,492 - +1.9 626,539 - +0.2 626,843 + PP_0540 0.46 +0.5 626,843 + PP_0540 0.46 -0.5 626,856 + PP_0540 0.48 -1.5 626,868 - PP_0540 0.50 +4.3 626,936 + PP_0540 0.60 -1.5 626,936 + PP_0540 0.60 +0.4 627,067 + PP_0540 0.81 -0.5 627,068 - PP_0540 0.81 -0.4 627,068 - PP_0540 0.81 -1.7 627,111 - PP_0540 0.87 -1.1 627,111 - PP_0540 0.87 +0.1 627,125 + PP_0540 0.90 -1.3 627,125 + PP_0540 0.90 +1.9 627,126 - PP_0540 0.90 -0.2 627,126 - PP_0540 0.90 +0.7 627,126 - PP_0540 0.90 -1.3 627,126 - PP_0540 0.90 -0.4 627,126 - PP_0540 0.90 +0.9 627,126 - PP_0540 0.90 +0.3 627,126 - PP_0540 0.90 +1.2 627,149 + -0.1 627,194 + -0.7 627,194 + -0.2 627,194 + +0.1 627,194 + +1.9 627,195 - +0.5 627,195 - -0.9 627,195 - -0.5 627,195 - -0.9 627,195 - -0.4 627,218 - -0.2 627,218 - -0.4 627,271 - +1.1 627,272 + +1.2 627,273 - +1.6 627,273 - -0.5 627,273 - +0.3 627,273 - +0.4 627,273 - +0.4 627,273 - +0.9 627,278 + +0.2 627,307 - -0.4 627,317 + -1.7 627,318 - -1.2 627,322 + +0.6 627,323 - -0.3 627,323 - -0.3 627,323 - +0.1 627,331 - -0.5 627,380 + -0.2 627,380 + -0.9 627,380 + -0.6 627,381 - -1.3 627,381 - -0.0 627,381 - -1.0 627,381 - -1.7 627,436 - +6.0 627,436 - +0.5 627,436 - -1.9
Or see this region's nucleotide sequence