Experiment: Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0046 and PP_0047 are separated by 489 nucleotides PP_0047 and PP_0048 are separated by 117 nucleotides PP_0048 and PP_5423 are separated by 101 nucleotides
PP_0046: PP_0046 - tyrosine-specific outer membrane porin D, at 52,394 to 53,737
_0046
PP_0047: PP_0047 - response regulator, at 54,227 to 54,901
_0047
PP_0048: PP_0048 - conserved protein of unknown function, at 55,019 to 55,342
_0048
PP_5423: PP_5423 - conserved membrane protein of unknown function, at 55,444 to 55,971
_5423
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 53.227 kb on + strand, within PP_0046 at 53.227 kb on + strand, within PP_0046 at 53.228 kb on - strand, within PP_0046 at 53.345 kb on + strand, within PP_0046 at 53.346 kb on - strand, within PP_0046 at 53.390 kb on + strand, within PP_0046 at 53.390 kb on + strand, within PP_0046 at 53.391 kb on - strand, within PP_0046 at 53.435 kb on + strand, within PP_0046 at 53.456 kb on + strand, within PP_0046 at 53.514 kb on - strand, within PP_0046 at 53.534 kb on + strand, within PP_0046 at 53.535 kb on - strand, within PP_0046 at 53.535 kb on - strand, within PP_0046 at 53.606 kb on + strand at 53.607 kb on - strand at 53.707 kb on - strand at 53.791 kb on + strand at 53.813 kb on + strand at 53.828 kb on + strand at 53.898 kb on - strand at 53.898 kb on - strand at 54.107 kb on - strand at 54.306 kb on + strand, within PP_0047 at 54.306 kb on + strand, within PP_0047 at 54.307 kb on - strand, within PP_0047 at 54.381 kb on + strand, within PP_0047 at 54.381 kb on + strand, within PP_0047 at 54.381 kb on + strand, within PP_0047 at 54.382 kb on - strand, within PP_0047 at 54.449 kb on - strand, within PP_0047 at 54.600 kb on + strand, within PP_0047 at 54.601 kb on - strand, within PP_0047 at 54.689 kb on + strand, within PP_0047 at 54.699 kb on + strand, within PP_0047 at 54.718 kb on + strand, within PP_0047 at 54.799 kb on - strand, within PP_0047 at 54.831 kb on + strand, within PP_0047 at 54.832 kb on - strand, within PP_0047 at 54.832 kb on - strand, within PP_0047 at 54.862 kb on + strand at 54.863 kb on - strand at 54.900 kb on - strand at 55.016 kb on + strand at 55.017 kb on - strand at 55.025 kb on + strand at 55.025 kb on + strand at 55.027 kb on + strand at 55.028 kb on - strand at 55.028 kb on - strand at 55.214 kb on + strand, within PP_0048 at 55.377 kb on - strand at 55.465 kb on - strand at 55.537 kb on + strand, within PP_5423 at 55.867 kb on - strand, within PP_5423 at 55.877 kb on - strand, within PP_5423
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 53,227 + PP_0046 0.62 +0.8 53,227 + PP_0046 0.62 +0.1 53,228 - PP_0046 0.62 +1.4 53,345 + PP_0046 0.71 -0.2 53,346 - PP_0046 0.71 +0.9 53,390 + PP_0046 0.74 +0.4 53,390 + PP_0046 0.74 +0.5 53,391 - PP_0046 0.74 +0.1 53,435 + PP_0046 0.77 -0.5 53,456 + PP_0046 0.79 +1.4 53,514 - PP_0046 0.83 -0.8 53,534 + PP_0046 0.85 +2.1 53,535 - PP_0046 0.85 +0.4 53,535 - PP_0046 0.85 +0.4 53,606 + -0.5 53,607 - +0.0 53,707 - -0.6 53,791 + -1.1 53,813 + -1.3 53,828 + +0.2 53,898 - -0.6 53,898 - -0.2 54,107 - -1.3 54,306 + PP_0047 0.12 +2.6 54,306 + PP_0047 0.12 +0.5 54,307 - PP_0047 0.12 +1.0 54,381 + PP_0047 0.23 +1.5 54,381 + PP_0047 0.23 +2.8 54,381 + PP_0047 0.23 +1.9 54,382 - PP_0047 0.23 +1.1 54,449 - PP_0047 0.33 -0.4 54,600 + PP_0047 0.55 -2.1 54,601 - PP_0047 0.55 -0.9 54,689 + PP_0047 0.68 -1.7 54,699 + PP_0047 0.70 +0.7 54,718 + PP_0047 0.73 +1.2 54,799 - PP_0047 0.85 -0.9 54,831 + PP_0047 0.89 +0.2 54,832 - PP_0047 0.90 +0.0 54,832 - PP_0047 0.90 -1.3 54,862 + -0.2 54,863 - -0.9 54,900 - +0.5 55,016 + +0.2 55,017 - +6.6 55,025 + -1.1 55,025 + +0.2 55,027 + +0.2 55,028 - -0.5 55,028 - +1.8 55,214 + PP_0048 0.60 -1.2 55,377 - +0.8 55,465 - +0.3 55,537 + PP_5423 0.18 -0.9 55,867 - PP_5423 0.80 -0.4 55,877 - PP_5423 0.82 -1.2
Or see this region's nucleotide sequence