Strain Fitness in Pseudomonas putida KT2440 around PP_5340

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
6,086,791	+		PP_5339	0.29	+2.2
6,086,938	+		PP_5339	0.43	-0.4
6,087,082	+		PP_5339	0.56	-0.7
6,087,159	+		PP_5339	0.63	-2.7
6,087,186	+		PP_5339	0.66	+0.3
6,087,379	+		PP_5339	0.84	-0.5
6,087,380	-		PP_5339	0.84	+0.0
6,087,452	-				-1.2
6,087,584	+				-0.2
6,087,585	-				-0.5
6,087,585	-				-0.3
6,087,624	+				+1.4
6,087,624	+				-0.3
6,087,624	+				-0.3
6,087,624	+				+0.6
6,087,624	+				-0.9
6,087,625	-				-0.9
6,087,625	-				+0.3
6,087,655	+				-0.1
6,087,655	+				-0.6
6,087,691	-				-0.5
6,087,691	-				-1.2
6,087,692	+				+0.0
6,087,792	-				-0.3
6,087,792	-				+0.4
6,088,109	+		PP_5340	0.32	+0.5
6,088,112	+		PP_5340	0.32	-0.4
6,088,112	+		PP_5340	0.32	-0.0
6,088,112	+		PP_5340	0.32	+0.0
6,088,112	+		PP_5340	0.32	+1.0
6,088,112	+		PP_5340	0.32	-1.4
6,088,113	-		PP_5340	0.32	-0.5
6,088,113	-		PP_5340	0.32	+0.0
6,088,113	-		PP_5340	0.32	+0.6
6,088,113	-		PP_5340	0.32	+0.9
6,088,164	-		PP_5340	0.37	+0.7
6,088,286	+		PP_5340	0.49	+0.6
6,088,286	+		PP_5340	0.49	-0.5
6,088,287	-		PP_5340	0.49	-0.4
6,088,287	-		PP_5340	0.49	-1.3
6,088,287	-		PP_5340	0.49	+0.2
6,088,294	+		PP_5340	0.49	-0.7
6,088,294	+		PP_5340	0.49	-0.4
6,088,295	-		PP_5340	0.49	+2.2
6,088,364	+		PP_5340	0.56	+0.3
6,088,365	-		PP_5340	0.56	-1.0
6,088,365	-		PP_5340	0.56	-0.2
6,088,397	+		PP_5340	0.59	-0.3
6,088,398	-		PP_5340	0.59	+0.4
6,088,398	-		PP_5340	0.59	+1.6
6,088,469	+		PP_5340	0.66	+0.1
6,088,505	+		PP_5340	0.70	-0.6
6,088,505	+		PP_5340	0.70	-1.1
6,088,505	+		PP_5340	0.70	-0.1
6,088,517	+		PP_5340	0.71	+0.3
6,088,518	-		PP_5340	0.71	+0.3
6,088,592	+		PP_5340	0.78	+0.5
6,088,592	+		PP_5340	0.78	+1.0
6,088,593	-		PP_5340	0.78	+0.5
6,088,679	+		PP_5340	0.86	+0.4
6,088,916	+				+0.5
6,088,916	+				-0.3
6,088,917	-				+1.3
6,088,917	-				+1.0
6,088,917	-				+0.4
6,088,917	-				+0.7
6,088,917	-				-0.8
6,088,918	+				+0.2
6,088,918	+				+0.1
6,088,918	+				+0.4
6,088,919	-				+0.3
6,088,919	-				+0.0
6,088,919	-				+1.2
6,088,919	-				-1.7
6,088,919	-				+1.1
6,088,919	-				-0.4
6,088,919	-				+0.6
6,088,919	-				+0.3
6,088,920	+				+0.6
6,088,920	+				-0.8
6,088,920	+				-0.5
6,088,920	+				-2.2
6,088,921	-				+1.2
6,088,921	-				+1.0
6,088,921	-				-0.2
6,088,921	-				-0.1
6,088,921	-				-0.5
6,088,933	+		PP_5341	0.10	+0.5
6,088,933	+		PP_5341	0.10	+1.3
6,088,934	-		PP_5341	0.10	-0.3
6,088,990	+		PP_5341	0.15	-1.0
6,088,990	+		PP_5341	0.15	-2.4
6,088,991	-		PP_5341	0.15	+0.0
6,089,060	+		PP_5341	0.22	+0.1
6,089,060	+		PP_5341	0.22	-1.4
6,089,060	+		PP_5341	0.22	-0.3
6,089,060	+		PP_5341	0.22	+0.6
6,089,061	-		PP_5341	0.22	+3.5
6,089,061	-		PP_5341	0.22	+0.0
6,089,061	-		PP_5341	0.22	-0.2
6,089,061	-		PP_5341	0.22	+0.7
6,089,063	+		PP_5341	0.22	+0.3
6,089,063	+		PP_5341	0.22	+0.1
6,089,064	-		PP_5341	0.22	-0.2
6,089,212	+		PP_5341	0.35	+0.9
6,089,212	+		PP_5341	0.35	-0.2
6,089,212	+		PP_5341	0.35	-0.3
6,089,213	-		PP_5341	0.35	+1.1
6,089,213	-		PP_5341	0.35	+2.5
6,089,213	-		PP_5341	0.35	+0.2
6,089,213	-		PP_5341	0.35	+0.4
6,089,213	-		PP_5341	0.35	+0.6
6,089,213	-		PP_5341	0.35	+0.6
6,089,213	-		PP_5341	0.35	+1.2
6,089,214	+		PP_5341	0.36	+0.8
6,089,214	+		PP_5341	0.36	+0.1
6,089,214	+		PP_5341	0.36	+0.1
6,089,214	+		PP_5341	0.36	-0.3
6,089,214	+		PP_5341	0.36	-0.4
6,089,215	-		PP_5341	0.36	-0.3
6,089,215	-		PP_5341	0.36	-0.0
6,089,215	-		PP_5341	0.36	+0.5
6,089,215	-		PP_5341	0.36	-1.3
6,089,215	-		PP_5341	0.36	-0.7
6,089,215	-		PP_5341	0.36	+0.6
6,089,215	-		PP_5341	0.36	+0.1
6,089,215	-		PP_5341	0.36	-0.2
6,089,215	-		PP_5341	0.36	+0.5
6,089,215	-		PP_5341	0.36	+0.1
6,089,215	-		PP_5341	0.36	-1.3
6,089,218	+		PP_5341	0.36	-0.1
6,089,218	+		PP_5341	0.36	+0.2
6,089,218	+		PP_5341	0.36	-0.4
6,089,218	+		PP_5341	0.36	+0.3
6,089,218	+		PP_5341	0.36	+0.6
6,089,219	-		PP_5341	0.36	-0.5
6,089,219	-		PP_5341	0.36	+0.1
6,089,375	+		PP_5341	0.50	+1.6
6,089,375	+		PP_5341	0.50	+0.6
6,089,393	-		PP_5341	0.52	-1.6
6,089,431	+		PP_5341	0.55	-0.6
6,089,472	+		PP_5341	0.59	+0.2
6,089,479	+		PP_5341	0.60	-0.7
6,089,480	-		PP_5341	0.60	-1.6
6,089,480	-		PP_5341	0.60	+1.0
6,089,480	-		PP_5341	0.60	-0.3
6,089,497	+		PP_5341	0.61	+1.6
6,089,497	+		PP_5341	0.61	-0.8
6,089,497	+		PP_5341	0.61	+0.2
6,089,497	+		PP_5341	0.61	+0.6
6,089,497	+		PP_5341	0.61	+1.3
6,089,498	-		PP_5341	0.61	-0.0
6,089,542	+		PP_5341	0.65	+0.1
6,089,691	+		PP_5341	0.79	-0.6
6,089,691	+		PP_5341	0.79	+0.4
6,089,691	+		PP_5341	0.79	+0.3
6,089,691	+		PP_5341	0.79	+0.7
6,089,691	+		PP_5341	0.79	+0.7
6,089,691	+		PP_5341	0.79	+0.1
6,089,691	+		PP_5341	0.79	+0.0
6,089,691	+		PP_5341	0.79	-0.0
6,089,692	-		PP_5341	0.79	-0.4
6,089,692	-		PP_5341	0.79	+0.1
6,089,705	-		PP_5341	0.80	-0.3
6,089,705	-		PP_5341	0.80	-0.4
6,089,818	+				+0.2