Strain Fitness in Pseudomonas putida KT2440 around PP_0316

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0315 and PP_0316 are separated by 289 nucleotidesPP_0316 and PP_0317 are separated by 108 nucleotides PP_0315: PP_0315 - putative glycine-betaine dioxygenase subunit, at 378,122 to 379,414 _0315 PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810 _0316 PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 378.769 kb on - strand, within PP_0315at 378.813 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.824 kb on - strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.859 kb on - strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.042 kb on - strand, within PP_0315at 379.042 kb on - strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.255 kb on + strand, within PP_0315at 379.256 kb on - strand, within PP_0315at 379.302 kb on + strandat 379.303 kb on - strandat 379.324 kb on - strandat 379.419 kb on + strandat 379.419 kb on + strandat 379.420 kb on - strandat 379.420 kb on - strandat 379.689 kb on - strandat 379.914 kb on + strand, within PP_0316at 379.914 kb on + strand, within PP_0316at 380.091 kb on + strand, within PP_0316at 380.091 kb on + strand, within PP_0316at 380.111 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.146 kb on - strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.317 kb on - strand, within PP_0316at 380.355 kb on + strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.394 kb on + strand, within PP_0316at 380.394 kb on + strand, within PP_0316at 380.666 kb on + strand, within PP_0316at 380.667 kb on - strand, within PP_0316at 380.667 kb on - strand, within PP_0316at 380.757 kb on + strandat 380.757 kb on + strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.920 kb on + strandat 380.921 kb on - strandat 380.921 kb on - strandat 380.937 kb on + strandat 380.938 kb on - strandat 381.066 kb on + strandat 381.219 kb on + strandat 381.220 kb on - strand, within PP_0317at 381.220 kb on - strand, within PP_0317at 381.220 kb on - strand, within PP_0317at 381.287 kb on + strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.461 kb on + strand, within PP_0317at 381.461 kb on + strand, within PP_0317at 381.462 kb on - strand, within PP_0317at 381.762 kb on - strand, within PP_0317

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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378,769 - PP_0315 0.50 -0.8
378,813 + PP_0315 0.53 -0.1
378,823 + PP_0315 0.54 -1.4
378,823 + PP_0315 0.54 +0.5
378,824 - PP_0315 0.54 +0.2
378,858 + PP_0315 0.57 -1.0
378,858 + PP_0315 0.57 -0.7
378,858 + PP_0315 0.57 +0.2
378,859 - PP_0315 0.57 -0.3
378,870 + PP_0315 0.58 -0.5
378,870 + PP_0315 0.58 +0.8
378,870 + PP_0315 0.58 -1.6
378,870 + PP_0315 0.58 -0.9
378,870 + PP_0315 0.58 -0.3
378,870 + PP_0315 0.58 -0.1
378,871 - PP_0315 0.58 +0.9
378,871 - PP_0315 0.58 -1.7
378,871 - PP_0315 0.58 -1.5
378,871 - PP_0315 0.58 +0.1
379,041 + PP_0315 0.71 +0.6
379,041 + PP_0315 0.71 +0.2
379,041 + PP_0315 0.71 +1.4
379,042 - PP_0315 0.71 -0.2
379,042 - PP_0315 0.71 +0.6
379,203 + PP_0315 0.84 +0.3
379,203 + PP_0315 0.84 +0.8
379,203 + PP_0315 0.84 -0.7
379,203 + PP_0315 0.84 -0.4
379,204 - PP_0315 0.84 +0.1
379,204 - PP_0315 0.84 -0.4
379,204 - PP_0315 0.84 -0.2
379,255 + PP_0315 0.88 +0.5
379,256 - PP_0315 0.88 -0.6
379,302 + -0.2
379,303 - -0.5
379,324 - -0.3
379,419 + +1.3
379,419 + -1.3
379,420 - +0.5
379,420 - -0.1
379,689 - -1.0
379,914 + PP_0316 0.19 +0.7
379,914 + PP_0316 0.19 +0.4
380,091 + PP_0316 0.35 -0.3
380,091 + PP_0316 0.35 +1.4
380,111 + PP_0316 0.37 +0.6
380,145 + PP_0316 0.40 +0.8
380,145 + PP_0316 0.40 +0.4
380,146 - PP_0316 0.40 -0.5
380,211 + PP_0316 0.46 -0.2
380,211 + PP_0316 0.46 +0.3
380,212 - PP_0316 0.46 -0.7
380,212 - PP_0316 0.46 -0.1
380,317 - PP_0316 0.55 -0.9
380,355 + PP_0316 0.59 +1.5
380,356 - PP_0316 0.59 +0.4
380,356 - PP_0316 0.59 -2.0
380,356 - PP_0316 0.59 -0.2
380,356 - PP_0316 0.59 -0.3
380,394 + PP_0316 0.62 -0.9
380,394 + PP_0316 0.62 -0.7
380,666 + PP_0316 0.87 -1.5
380,667 - PP_0316 0.87 +0.3
380,667 - PP_0316 0.87 +1.0
380,757 + -0.0
380,757 + +1.6
380,758 - -1.3
380,758 - +1.0
380,758 - +0.9
380,758 - +2.0
380,758 - +0.2
380,920 + -1.0
380,921 - +0.7
380,921 - -0.6
380,937 + +0.5
380,938 - -0.7
381,066 + +0.7
381,219 + +2.3
381,220 - PP_0317 0.19 +0.6
381,220 - PP_0317 0.19 +0.5
381,220 - PP_0317 0.19 +0.8
381,287 + PP_0317 0.23 -0.1
381,288 - PP_0317 0.23 -0.0
381,288 - PP_0317 0.23 -0.6
381,288 - PP_0317 0.23 +0.5
381,461 + PP_0317 0.33 -1.1
381,461 + PP_0317 0.33 +0.5
381,462 - PP_0317 0.33 +0.8
381,762 - PP_0317 0.52 +0.7

Or see this region's nucleotide sequence