Strain Fitness in Pseudomonas putida KT2440 around PP_4776

Experiment: Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4775 and PP_4776 are separated by 395 nucleotidesPP_4776 and PP_4777 are separated by 53 nucleotidesPP_4777 and PP_4778 are separated by 35 nucleotidesPP_4778 and PP_4779 are separated by 6 nucleotides PP_4775: PP_4775 - conserved protein of unknown function, at 5,436,722 to 5,437,558 _4775 PP_4776: PP_4776 - AsnC family transcriptional regulator, at 5,437,954 to 5,438,430 _4776 PP_4777: PP_4777 - conserved protein of unknown function, at 5,438,484 to 5,438,687 _4777 PP_4778: PP_4778 - 23S rRNA pseudouridine 2457 synthase, at 5,438,723 to 5,439,355 _4778 PP_4779: PP_4779 - AMP nucleosidase, at 5,439,362 to 5,440,825 _4779 Position (kb) 5437 5438 5439Strain fitness (log2 ratio) -2 -1 0 1 2at 5436.987 kb on + strand, within PP_4775at 5436.987 kb on + strand, within PP_4775at 5436.988 kb on - strand, within PP_4775at 5436.988 kb on - strand, within PP_4775at 5436.988 kb on - strand, within PP_4775at 5436.988 kb on - strand, within PP_4775at 5436.988 kb on - strand, within PP_4775at 5437.009 kb on - strand, within PP_4775at 5437.014 kb on + strand, within PP_4775at 5437.017 kb on + strand, within PP_4775at 5437.017 kb on + strand, within PP_4775at 5437.017 kb on + strand, within PP_4775at 5437.017 kb on + strand, within PP_4775at 5437.018 kb on - strand, within PP_4775at 5437.018 kb on - strand, within PP_4775at 5437.018 kb on - strand, within PP_4775at 5437.072 kb on - strand, within PP_4775at 5437.083 kb on + strand, within PP_4775at 5437.083 kb on + strand, within PP_4775at 5437.083 kb on + strand, within PP_4775at 5437.101 kb on + strand, within PP_4775at 5437.122 kb on + strand, within PP_4775at 5437.122 kb on + strand, within PP_4775at 5437.122 kb on + strand, within PP_4775at 5437.123 kb on - strand, within PP_4775at 5437.167 kb on + strand, within PP_4775at 5437.167 kb on + strand, within PP_4775at 5437.167 kb on + strand, within PP_4775at 5437.168 kb on - strand, within PP_4775at 5437.168 kb on - strand, within PP_4775at 5437.168 kb on - strand, within PP_4775at 5437.187 kb on + strand, within PP_4775at 5437.188 kb on - strand, within PP_4775at 5437.188 kb on - strand, within PP_4775at 5437.365 kb on + strand, within PP_4775at 5437.365 kb on + strand, within PP_4775at 5437.366 kb on - strand, within PP_4775at 5437.366 kb on - strand, within PP_4775at 5437.368 kb on + strand, within PP_4775at 5437.369 kb on - strand, within PP_4775at 5437.369 kb on - strand, within PP_4775at 5437.369 kb on - strand, within PP_4775at 5437.600 kb on + strandat 5437.600 kb on + strandat 5437.601 kb on - strandat 5437.601 kb on - strandat 5437.601 kb on - strandat 5437.601 kb on - strandat 5437.625 kb on + strandat 5437.737 kb on + strandat 5437.738 kb on - strandat 5437.738 kb on - strandat 5437.834 kb on + strandat 5437.835 kb on - strandat 5438.098 kb on + strand, within PP_4776at 5438.098 kb on + strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.159 kb on - strand, within PP_4776at 5438.159 kb on - strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.172 kb on + strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.275 kb on + strand, within PP_4776at 5438.328 kb on - strand, within PP_4776at 5438.429 kb on - strandat 5438.429 kb on - strandat 5438.449 kb on + strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.451 kb on + strandat 5438.452 kb on - strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.685 kb on + strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.724 kb on + strandat 5438.725 kb on - strandat 5438.855 kb on - strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.165 kb on - strand, within PP_4778at 5439.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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5,436,987 + PP_4775 0.32 -0.1
5,436,987 + PP_4775 0.32 -1.3
5,436,988 - PP_4775 0.32 -0.4
5,436,988 - PP_4775 0.32 +0.3
5,436,988 - PP_4775 0.32 +0.9
5,436,988 - PP_4775 0.32 +0.2
5,436,988 - PP_4775 0.32 +0.6
5,437,009 - PP_4775 0.34 -0.3
5,437,014 + PP_4775 0.35 -0.7
5,437,017 + PP_4775 0.35 +0.7
5,437,017 + PP_4775 0.35 +0.2
5,437,017 + PP_4775 0.35 -0.1
5,437,017 + PP_4775 0.35 +0.7
5,437,018 - PP_4775 0.35 -1.3
5,437,018 - PP_4775 0.35 +1.3
5,437,018 - PP_4775 0.35 +0.1
5,437,072 - PP_4775 0.42 -1.6
5,437,083 + PP_4775 0.43 +1.6
5,437,083 + PP_4775 0.43 -0.1
5,437,083 + PP_4775 0.43 -0.1
5,437,101 + PP_4775 0.45 +0.6
5,437,122 + PP_4775 0.48 +0.1
5,437,122 + PP_4775 0.48 -0.2
5,437,122 + PP_4775 0.48 -0.3
5,437,123 - PP_4775 0.48 +0.6
5,437,167 + PP_4775 0.53 -1.0
5,437,167 + PP_4775 0.53 -0.7
5,437,167 + PP_4775 0.53 -0.3
5,437,168 - PP_4775 0.53 -0.8
5,437,168 - PP_4775 0.53 -0.1
5,437,168 - PP_4775 0.53 +0.1
5,437,187 + PP_4775 0.56 +0.8
5,437,188 - PP_4775 0.56 +0.3
5,437,188 - PP_4775 0.56 +0.3
5,437,365 + PP_4775 0.77 +0.3
5,437,365 + PP_4775 0.77 +1.3
5,437,366 - PP_4775 0.77 +0.9
5,437,366 - PP_4775 0.77 -0.2
5,437,368 + PP_4775 0.77 +0.6
5,437,369 - PP_4775 0.77 -1.0
5,437,369 - PP_4775 0.77 -0.1
5,437,369 - PP_4775 0.77 -0.1
5,437,600 + -0.4
5,437,600 + -0.9
5,437,601 - -0.5
5,437,601 - -0.6
5,437,601 - +0.8
5,437,601 - +0.2
5,437,625 + +0.2
5,437,737 + +0.7
5,437,738 - -1.8
5,437,738 - +0.0
5,437,834 + -0.1
5,437,835 - +2.0
5,438,098 + PP_4776 0.30 +1.0
5,438,098 + PP_4776 0.30 -0.6
5,438,099 - PP_4776 0.30 -0.5
5,438,099 - PP_4776 0.30 -0.2
5,438,099 - PP_4776 0.30 +0.2
5,438,099 - PP_4776 0.30 +0.3
5,438,100 + PP_4776 0.31 -1.4
5,438,100 + PP_4776 0.31 -0.1
5,438,100 + PP_4776 0.31 -1.7
5,438,100 + PP_4776 0.31 +0.3
5,438,100 + PP_4776 0.31 +1.9
5,438,101 - PP_4776 0.31 -2.2
5,438,101 - PP_4776 0.31 +2.5
5,438,101 - PP_4776 0.31 +0.1
5,438,101 - PP_4776 0.31 -1.5
5,438,159 - PP_4776 0.43 -1.1
5,438,159 - PP_4776 0.43 +0.1
5,438,168 + PP_4776 0.45 +1.9
5,438,168 + PP_4776 0.45 -1.5
5,438,168 + PP_4776 0.45 -0.6
5,438,168 + PP_4776 0.45 +1.2
5,438,168 + PP_4776 0.45 +0.9
5,438,169 - PP_4776 0.45 -0.3
5,438,169 - PP_4776 0.45 -1.5
5,438,169 - PP_4776 0.45 +1.1
5,438,169 - PP_4776 0.45 +0.5
5,438,169 - PP_4776 0.45 -0.6
5,438,172 + PP_4776 0.46 +1.0
5,438,173 - PP_4776 0.46 +0.2
5,438,173 - PP_4776 0.46 +1.9
5,438,173 - PP_4776 0.46 +0.2
5,438,275 + PP_4776 0.67 -1.0
5,438,328 - PP_4776 0.78 -1.3
5,438,429 - -1.4
5,438,429 - +0.7
5,438,449 + -1.0
5,438,450 - +0.6
5,438,450 - +0.6
5,438,450 - +0.6
5,438,450 - +0.1
5,438,451 + -0.2
5,438,452 - +0.7
5,438,683 + +0.5
5,438,683 + -0.5
5,438,683 + -0.8
5,438,683 + +0.4
5,438,683 + +0.3
5,438,683 + +0.6
5,438,684 - +1.2
5,438,684 - +0.9
5,438,684 - +0.1
5,438,684 - +0.2
5,438,685 + -1.1
5,438,686 - -1.1
5,438,686 - -1.7
5,438,686 - -1.5
5,438,724 + +0.1
5,438,725 - -0.2
5,438,855 - PP_4778 0.21 +0.1
5,439,054 + PP_4778 0.52 +0.5
5,439,054 + PP_4778 0.52 +0.2
5,439,054 + PP_4778 0.52 +0.3
5,439,055 - PP_4778 0.52 -0.2
5,439,055 - PP_4778 0.52 +0.3
5,439,164 + PP_4778 0.70 -2.2
5,439,164 + PP_4778 0.70 +0.2
5,439,165 - PP_4778 0.70 -0.3
5,439,338 - -0.5

Or see this region's nucleotide sequence