Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0142 and PP_0143 are separated by 131 nucleotides PP_0143 and PP_0144 are separated by 93 nucleotides
PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949
_0142
PP_0143: PP_0143 - conserved membrane protein of unknown function, at 151,081 to 152,106
_0143
PP_0144: PP_0144 - Metalloprotease, insulinase family, at 152,200 to 153,606
_0144
Position (kb)
151
152
153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 150.084 kb on - strand, within PP_0142 at 150.396 kb on - strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.593 kb on - strand, within PP_0142 at 150.649 kb on - strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.858 kb on + strand at 150.859 kb on - strand at 150.859 kb on - strand at 150.883 kb on + strand at 150.883 kb on + strand at 150.884 kb on - strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.940 kb on + strand at 150.940 kb on + strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.974 kb on - strand at 150.986 kb on + strand at 150.987 kb on - strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.029 kb on + strand at 151.030 kb on - strand at 151.087 kb on - strand at 151.087 kb on - strand at 151.217 kb on + strand, within PP_0143 at 151.217 kb on + strand, within PP_0143 at 151.218 kb on - strand, within PP_0143 at 151.292 kb on + strand, within PP_0143 at 151.334 kb on + strand, within PP_0143 at 151.335 kb on - strand, within PP_0143 at 151.335 kb on - strand, within PP_0143 at 151.340 kb on + strand, within PP_0143 at 151.340 kb on + strand, within PP_0143 at 151.341 kb on - strand, within PP_0143 at 151.341 kb on - strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.416 kb on + strand, within PP_0143 at 151.715 kb on + strand, within PP_0143 at 151.715 kb on + strand, within PP_0143 at 151.716 kb on + strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.718 kb on + strand, within PP_0143 at 151.719 kb on - strand, within PP_0143 at 152.089 kb on - strand at 152.114 kb on + strand at 152.114 kb on + strand at 152.115 kb on - strand at 152.115 kb on - strand at 152.191 kb on - strand at 152.214 kb on + strand at 152.214 kb on + strand at 152.214 kb on + strand at 152.315 kb on + strand at 152.320 kb on + strand at 152.320 kb on + strand at 152.320 kb on + strand at 152.321 kb on - strand at 152.321 kb on - strand at 152.345 kb on + strand, within PP_0144 at 152.345 kb on + strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.465 kb on + strand, within PP_0144 at 152.465 kb on + strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.469 kb on - strand, within PP_0144 at 152.691 kb on - strand, within PP_0144 at 152.723 kb on + strand, within PP_0144 at 152.940 kb on - strand, within PP_0144
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 150,084 - PP_0142 0.24 +1.1 150,396 - PP_0142 0.51 -1.1 150,460 + PP_0142 0.57 -1.1 150,460 + PP_0142 0.57 -0.3 150,460 + PP_0142 0.57 +0.3 150,460 + PP_0142 0.57 +0.3 150,460 + PP_0142 0.57 +1.2 150,461 - PP_0142 0.57 +2.6 150,461 - PP_0142 0.57 +1.1 150,461 - PP_0142 0.57 +0.8 150,461 - PP_0142 0.57 +0.1 150,593 - PP_0142 0.69 +1.5 150,649 - PP_0142 0.73 +0.8 150,666 + PP_0142 0.75 +1.3 150,666 + PP_0142 0.75 +0.7 150,666 + PP_0142 0.75 -0.1 150,666 + PP_0142 0.75 +2.2 150,858 + -0.7 150,859 - +0.8 150,859 - +1.3 150,883 + +1.6 150,883 + -0.9 150,884 - -0.4 150,886 + -2.2 150,886 + -0.3 150,886 + -0.9 150,886 + +0.5 150,940 + +1.4 150,940 + -0.1 150,941 - -0.7 150,941 - +0.4 150,941 - -2.3 150,941 - +1.0 150,941 - +1.2 150,974 - +0.7 150,986 + -0.4 150,987 - +1.2 151,016 + -0.8 151,016 + +0.7 151,016 + -0.5 151,016 + -1.5 151,016 + +0.7 151,017 - +1.5 151,017 - -0.4 151,017 - -0.0 151,017 - +0.3 151,029 + +0.9 151,030 - +3.2 151,087 - +0.4 151,087 - +1.4 151,217 + PP_0143 0.13 +0.8 151,217 + PP_0143 0.13 -0.6 151,218 - PP_0143 0.13 -1.0 151,292 + PP_0143 0.21 -0.5 151,334 + PP_0143 0.25 -0.2 151,335 - PP_0143 0.25 -0.0 151,335 - PP_0143 0.25 -0.7 151,340 + PP_0143 0.25 +0.4 151,340 + PP_0143 0.25 +0.0 151,341 - PP_0143 0.25 -1.0 151,341 - PP_0143 0.25 -0.6 151,408 + PP_0143 0.32 -0.5 151,408 + PP_0143 0.32 -0.1 151,408 + PP_0143 0.32 -1.9 151,408 + PP_0143 0.32 -0.5 151,409 - PP_0143 0.32 -1.1 151,409 - PP_0143 0.32 +0.8 151,409 - PP_0143 0.32 -1.0 151,416 + PP_0143 0.33 -0.7 151,715 + PP_0143 0.62 -1.0 151,715 + PP_0143 0.62 -0.7 151,716 + PP_0143 0.62 +1.4 151,716 - PP_0143 0.62 -0.3 151,716 - PP_0143 0.62 -1.1 151,716 - PP_0143 0.62 -1.4 151,716 - PP_0143 0.62 -1.0 151,716 - PP_0143 0.62 -2.1 151,716 - PP_0143 0.62 -0.7 151,718 + PP_0143 0.62 -0.4 151,719 - PP_0143 0.62 -1.0 152,089 - +0.4 152,114 + -1.1 152,114 + +0.8 152,115 - -1.6 152,115 - -0.8 152,191 - -0.4 152,214 + +0.4 152,214 + -0.7 152,214 + +0.5 152,315 + -0.2 152,320 + +0.1 152,320 + +0.4 152,320 + -0.6 152,321 - -1.1 152,321 - -0.1 152,345 + PP_0144 0.10 +0.5 152,345 + PP_0144 0.10 -0.6 152,346 - PP_0144 0.10 -0.2 152,346 - PP_0144 0.10 -0.0 152,346 - PP_0144 0.10 -0.5 152,346 - PP_0144 0.10 +0.7 152,346 - PP_0144 0.10 +0.3 152,442 + PP_0144 0.17 +0.4 152,442 + PP_0144 0.17 -2.4 152,442 + PP_0144 0.17 +0.9 152,445 - PP_0144 0.17 +0.4 152,445 - PP_0144 0.17 -0.4 152,445 - PP_0144 0.17 +0.3 152,445 - PP_0144 0.17 +0.3 152,465 + PP_0144 0.19 +0.8 152,465 + PP_0144 0.19 +0.1 152,466 - PP_0144 0.19 -0.1 152,466 - PP_0144 0.19 +0.1 152,466 - PP_0144 0.19 -0.8 152,466 - PP_0144 0.19 +0.5 152,469 - PP_0144 0.19 +0.2 152,691 - PP_0144 0.35 -0.4 152,723 + PP_0144 0.37 +1.5 152,940 - PP_0144 0.53 +0.8
Or see this region's nucleotide sequence