Strain Fitness in Pseudomonas putida KT2440 around PP_5404

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
6,160,962	+		PP_5740	0.66	+0.3
6,160,962	+		PP_5740	0.66	+0.9
6,160,962	+		PP_5740	0.66	+1.1
6,160,963	-		PP_5740	0.66	+1.6
6,160,963	-		PP_5740	0.66	+1.3
6,160,963	-		PP_5740	0.66	+0.2
6,160,976	+		PP_5740	0.68	+0.5
6,160,977	-		PP_5740	0.68	-0.7
6,161,014	+		PP_5740	0.74	-0.3
6,161,015	-		PP_5740	0.74	+1.5
6,161,015	-		PP_5740	0.74	+0.2
6,161,051	+		PP_5740	0.80	+1.9
6,161,051	+		PP_5740	0.80	+1.1
6,161,052	-		PP_5740	0.80	+0.2
6,161,052	-		PP_5740	0.80	+0.6
6,161,094	-		PP_5740	0.86	-0.0
6,161,137	+				+2.7
6,161,137	+				-0.2
6,161,138	-				-0.6
6,161,196	+				-0.2
6,161,196	+				-0.5
6,161,197	-				+0.7
6,161,197	-				-1.1
6,161,197	-				+0.6
6,161,197	-				+0.4
6,161,197	-				-1.9
6,161,200	+				-1.0
6,161,200	+				+0.2
6,161,200	+				+0.9
6,161,200	+				-1.1
6,161,200	+				-0.9
6,161,200	+				+0.7
6,161,200	+				-1.5
6,161,200	+				+2.0
6,161,201	-				+0.7
6,161,201	-				+0.7
6,161,201	-				-0.8
6,161,201	-				-1.2
6,161,274	+		PP_5741	0.11	-1.5
6,161,274	+		PP_5741	0.11	-0.4
6,161,274	+		PP_5741	0.11	-0.2
6,161,302	+		PP_5741	0.20	+0.0
6,161,302	+		PP_5741	0.20	+2.3
6,161,335	+		PP_5741	0.31	-0.0
6,161,420	-		PP_5741	0.60	+3.3
6,161,420	-		PP_5741	0.60	+0.9
6,161,420	-		PP_5741	0.60	-0.2
6,161,420	-		PP_5741	0.60	+0.0
6,161,422	+		PP_5741	0.61	-0.0
6,161,423	-		PP_5741	0.61	-2.1
6,161,423	-		PP_5741	0.61	-0.3
6,161,423	-		PP_5741	0.61	-0.6
6,161,450	+		PP_5741	0.70	+0.4
6,161,450	+		PP_5741	0.70	+0.7
6,161,451	-		PP_5741	0.70	+1.2
6,161,467	+		PP_5741	0.76	-0.8
6,161,467	+		PP_5741	0.76	+0.2
6,161,467	+		PP_5741	0.76	+2.2
6,161,468	-		PP_5741	0.76	-0.4
6,161,468	-		PP_5741	0.76	-0.7
6,161,468	-		PP_5741	0.76	+0.5
6,161,468	-		PP_5741	0.76	-0.1
6,161,468	-		PP_5741	0.76	+1.4
6,161,469	+		PP_5741	0.76	+2.6
6,161,469	+		PP_5741	0.76	+1.7
6,161,469	+		PP_5741	0.76	+0.4
6,161,469	+		PP_5741	0.76	+0.4
6,161,469	+		PP_5741	0.76	-0.8
6,161,470	-		PP_5741	0.77	-0.2
6,161,470	-		PP_5741	0.77	+0.5
6,161,470	-		PP_5741	0.77	-0.0
6,161,483	+		PP_5741	0.81	+3.7
6,161,518	+				+0.3
6,161,533	+				-0.1
6,161,533	+				-0.9
6,161,534	-				+0.6
6,161,534	-				-0.3
6,161,565	-				+0.8
6,161,565	-				-0.3
6,161,606	+				+0.4
6,161,618	+				+0.1
6,161,654	+		PP_5403	0.20	-1.3
6,161,654	+		PP_5403	0.20	-0.3
6,161,654	+		PP_5403	0.20	+0.8
6,161,654	+		PP_5403	0.20	+0.0
6,161,655	-		PP_5403	0.20	+0.3
6,161,655	-		PP_5403	0.20	-0.1
6,161,762	+		PP_5403	0.54	-0.6
6,161,762	+		PP_5403	0.54	-0.6
6,161,762	+		PP_5403	0.54	-1.5
6,161,762	+		PP_5403	0.54	+0.6
6,161,762	+		PP_5403	0.54	+0.4
6,161,762	+		PP_5403	0.54	+0.7
6,161,762	+		PP_5403	0.54	+0.2
6,161,762	+		PP_5403	0.54	+0.5
6,161,763	-		PP_5403	0.54	+0.7
6,161,763	-		PP_5403	0.54	-1.3
6,161,763	-		PP_5403	0.54	-1.0
6,161,795	-		PP_5403	0.65	-0.4
6,161,816	+		PP_5403	0.71	-0.6
6,161,817	-		PP_5403	0.72	-2.1
6,161,928	+				+0.1
6,161,928	+				+0.6
6,161,928	+				+0.5
6,161,928	+				-0.4
6,161,928	+				-0.7
6,161,928	+				-0.4
6,161,929	-				+0.3
6,161,929	-				-2.5
6,161,929	-				+0.2
6,161,929	-				+0.3
6,161,929	-				-0.6
6,161,929	-				-0.6
6,161,929	-				+1.2
6,161,929	-				+0.9
6,161,929	-				-0.9
6,161,949	-				-0.1
6,161,973	+				+3.4
6,161,987	+				+0.9
6,161,988	-				+0.3
6,161,988	-				+0.0
6,161,993	+				-0.4
6,161,993	+				-0.1
6,161,994	-				+0.3
6,161,994	-				+0.2
6,161,994	-				+0.8
6,161,994	-				+1.2
6,161,994	-				+1.8
6,161,994	-				+1.0
6,161,994	-				-0.2
6,161,994	-				+1.1
6,161,994	-				-0.5
6,161,994	-				+0.5
6,161,994	-				-0.9
6,162,080	+		PP_5404	0.11	+0.9
6,162,081	-		PP_5404	0.11	+0.5
6,162,155	-		PP_5404	0.17	+1.5
6,162,155	-		PP_5404	0.17	-0.5
6,162,177	+		PP_5404	0.19	+0.4
6,162,178	-		PP_5404	0.19	+0.8
6,162,188	+		PP_5404	0.19	+0.5
6,162,188	+		PP_5404	0.19	+0.4
6,162,189	-		PP_5404	0.19	-0.1
6,162,189	-		PP_5404	0.19	-0.0
6,162,189	-		PP_5404	0.19	-0.7
6,162,189	-		PP_5404	0.19	+0.1
6,162,189	-		PP_5404	0.19	+1.0
6,162,238	+		PP_5404	0.23	-1.5
6,162,238	+		PP_5404	0.23	-0.2
6,162,284	-		PP_5404	0.27	+0.1
6,162,284	-		PP_5404	0.27	-0.1
6,162,298	+		PP_5404	0.28	-2.4
6,162,298	+		PP_5404	0.28	+0.0
6,162,298	+		PP_5404	0.28	+0.3
6,162,298	+		PP_5404	0.28	-1.2
6,162,301	-		PP_5404	0.28	+0.9
6,162,301	-		PP_5404	0.28	+0.9
6,162,301	-		PP_5404	0.28	-1.8
6,162,360	+		PP_5404	0.32	-0.9
6,162,360	+		PP_5404	0.32	-0.1
6,162,360	+		PP_5404	0.32	-0.4
6,162,361	-		PP_5404	0.32	+1.8
6,162,361	-		PP_5404	0.32	+0.0
6,162,361	-		PP_5404	0.32	+0.3
6,162,361	-		PP_5404	0.32	-0.3
6,162,361	-		PP_5404	0.32	+11.9
6,162,361	-		PP_5404	0.32	+3.4
6,162,380	+		PP_5404	0.34	+0.1
6,162,380	+		PP_5404	0.34	+2.3
6,162,381	-		PP_5404	0.34	+0.4
6,162,398	-		PP_5404	0.35	+0.4
6,162,415	-		PP_5404	0.36	+0.2
6,162,451	+		PP_5404	0.39	-0.6
6,162,451	+		PP_5404	0.39	+0.1
6,162,482	+		PP_5404	0.41	+0.5
6,162,482	+		PP_5404	0.41	-0.1
6,162,482	+		PP_5404	0.41	-0.7
6,162,482	+		PP_5404	0.41	+2.0
6,162,482	+		PP_5404	0.41	+0.9
6,162,483	-		PP_5404	0.41	+0.2
6,162,486	+		PP_5404	0.41	+0.4
6,162,486	+		PP_5404	0.41	+0.5
6,162,487	-		PP_5404	0.42	-1.3
6,162,487	-		PP_5404	0.42	+0.9
6,162,487	-		PP_5404	0.42	+1.1
6,162,487	-		PP_5404	0.42	+0.2
6,162,528	-		PP_5404	0.45	-0.2
6,162,528	-		PP_5404	0.45	+0.3
6,162,596	-		PP_5404	0.50	+2.2
6,162,597	+		PP_5404	0.50	-1.5
6,162,597	+		PP_5404	0.50	+1.0
6,162,597	+		PP_5404	0.50	+1.0
6,162,597	+		PP_5404	0.50	-1.2
6,162,597	+		PP_5404	0.50	+0.2
6,162,597	+		PP_5404	0.50	-1.0
6,162,597	+		PP_5404	0.50	-0.3
6,162,598	-		PP_5404	0.50	+1.4
6,162,598	-		PP_5404	0.50	+0.5
6,162,598	-		PP_5404	0.50	+2.1
6,162,598	-		PP_5404	0.50	-0.5
6,162,598	-		PP_5404	0.50	+0.6
6,162,647	+		PP_5404	0.53	-0.3
6,162,647	+		PP_5404	0.53	+0.2
6,162,648	-		PP_5404	0.54	+0.2
6,162,648	-		PP_5404	0.54	-0.4
6,162,648	-		PP_5404	0.54	+0.6
6,162,713	+		PP_5404	0.58	-0.4
6,162,769	+		PP_5404	0.63	-1.2
6,162,769	+		PP_5404	0.63	-0.6
6,162,769	+		PP_5404	0.63	-0.2
6,162,770	-		PP_5404	0.63	+0.3
6,162,770	-		PP_5404	0.63	-0.2
6,162,810	-		PP_5404	0.66	-0.4
6,162,813	-		PP_5404	0.66	+0.3
6,162,823	+		PP_5404	0.67	-1.4
6,162,853	-		PP_5404	0.69	+0.4
6,162,853	-		PP_5404	0.69	+0.4
6,162,859	+		PP_5404	0.69	+0.8
6,162,859	+		PP_5404	0.69	-0.0
6,162,860	-		PP_5404	0.69	+1.0
6,162,872	+		PP_5404	0.70	-0.1
6,162,872	+		PP_5404	0.70	+1.0
6,162,872	+		PP_5404	0.70	-0.2
6,162,872	+		PP_5404	0.70	+0.7
6,162,872	+		PP_5404	0.70	+0.0
6,162,873	-		PP_5404	0.70	+0.5
6,162,873	-		PP_5404	0.70	+0.0
6,162,873	-		PP_5404	0.70	+0.1
6,162,873	-		PP_5404	0.70	-0.1
6,162,905	+		PP_5404	0.73	+0.5
6,162,906	-		PP_5404	0.73	+0.4
6,162,965	+		PP_5404	0.77	-1.5
6,162,965	+		PP_5404	0.77	-0.2
6,162,966	-		PP_5404	0.77	+0.6
6,162,966	-		PP_5404	0.77	-1.0
6,163,027	-		PP_5404	0.82	+2.6
6,163,066	-		PP_5404	0.85	+1.8
6,163,066	-		PP_5404	0.85	-0.3
6,163,076	+		PP_5404	0.85	-0.3
6,163,119	+		PP_5404	0.88	+0.4
6,163,119	+		PP_5404	0.88	-0.8
6,163,120	-		PP_5404	0.89	+1.0
6,163,120	-		PP_5404	0.89	-0.4
6,163,146	-				+1.0
6,163,146	-				+0.4
6,163,146	-				-0.4
6,163,187	+				-2.0
6,163,237	+				+0.3
6,163,237	+				+0.8
6,163,237	+				-0.1
6,163,238	-				+0.8
6,163,238	-				-0.1
6,163,279	-				-0.3
6,163,471	-				-1.3
6,163,538	-		PP_5405	0.13	-0.9
6,163,609	-		PP_5405	0.17	-1.1
6,163,723	+		PP_5405	0.23	+0.2
6,163,788	+		PP_5405	0.26	-0.1
6,163,789	-		PP_5405	0.26	-1.0
6,163,802	+		PP_5405	0.26	-0.4
6,163,802	+		PP_5405	0.26	+0.4
6,163,802	+		PP_5405	0.26	-1.3
6,163,803	-		PP_5405	0.26	+1.0
6,163,803	-		PP_5405	0.26	+2.6
6,163,819	-		PP_5405	0.27	+0.6
6,163,824	+		PP_5405	0.28	-0.2
6,163,824	+		PP_5405	0.28	-1.1
6,163,824	+		PP_5405	0.28	-0.1
6,163,824	+		PP_5405	0.28	+0.8
6,163,825	-		PP_5405	0.28	+1.1
6,163,854	+		PP_5405	0.29	+0.7
6,163,854	+		PP_5405	0.29	+0.2
6,163,875	+		PP_5405	0.30	+0.5
6,163,876	-		PP_5405	0.30	+1.4
6,163,876	-		PP_5405	0.30	-0.3
6,163,876	-		PP_5405	0.30	-1.0
6,163,876	-		PP_5405	0.30	-0.2
6,163,935	+		PP_5405	0.33	-1.6
6,163,998	+		PP_5405	0.36	+0.1
6,163,998	+		PP_5405	0.36	-0.7
6,163,999	-		PP_5405	0.36	-0.0
6,164,018	+		PP_5405	0.37	-0.4
6,164,073	-		PP_5405	0.40	+0.3
6,164,104	-		PP_5405	0.41	-0.2