Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4850 and PP_4851 are separated by 9 nucleotides PP_4851 and PP_4852 are separated by 30 nucleotides
PP_4850: PP_4850 - conserved membrane protein of unknown function, at 5,517,513 to 5,518,580
_4850
PP_4851: PP_4851 - Phosphate starvation-inducible protein, PSIF, at 5,518,590 to 5,518,910
_4851
PP_4852: PP_4852 - Transcriptional regulator, AraC family, at 5,518,941 to 5,519,729
_4852
Position (kb) 5518
5519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5517.606 kb on + strand at 5517.607 kb on - strand at 5517.679 kb on + strand, within PP_4850 at 5517.679 kb on + strand, within PP_4850 at 5517.849 kb on + strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.520 kb on + strand at 5518.520 kb on + strand at 5518.521 kb on - strand at 5518.580 kb on + strand at 5518.928 kb on + strand at 5518.928 kb on + strand at 5518.983 kb on - strand at 5519.182 kb on - strand, within PP_4852 at 5519.322 kb on + strand, within PP_4852 at 5519.328 kb on + strand at 5519.467 kb on + strand, within PP_4852 at 5519.467 kb on + strand, within PP_4852 at 5519.468 kb on - strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.480 kb on - strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.603 kb on - strand, within PP_4852 at 5519.603 kb on - strand, within PP_4852 at 5519.675 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.721 kb on - strand at 5519.762 kb on - strand at 5519.767 kb on + strand at 5519.768 kb on - strand at 5519.768 kb on - strand at 5519.769 kb on + strand at 5519.792 kb on + strand at 5519.792 kb on + strand at 5519.796 kb on - strand at 5519.877 kb on + strand at 5519.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,517,606 + +0.2 5,517,607 - -0.6 5,517,679 + PP_4850 0.16 +4.9 5,517,679 + PP_4850 0.16 +1.0 5,517,849 + PP_4850 0.31 +2.2 5,517,850 - PP_4850 0.32 +0.7 5,517,850 - PP_4850 0.32 +1.2 5,517,850 - PP_4850 0.32 -0.3 5,518,171 + PP_4850 0.62 +0.5 5,518,171 + PP_4850 0.62 +0.3 5,518,520 + +0.0 5,518,520 + +0.4 5,518,521 - -0.5 5,518,580 + -1.4 5,518,928 + +1.4 5,518,928 + +2.1 5,518,983 - -0.6 5,519,182 - PP_4852 0.31 +0.3 5,519,322 + PP_4852 0.48 +0.5 5,519,328 + +2.4 5,519,467 + PP_4852 0.67 +1.0 5,519,467 + PP_4852 0.67 -1.3 5,519,468 - PP_4852 0.67 -0.0 5,519,471 + PP_4852 0.67 -0.3 5,519,471 + PP_4852 0.67 -1.3 5,519,471 + PP_4852 0.67 +0.8 5,519,471 + PP_4852 0.67 +0.4 5,519,472 - PP_4852 0.67 -1.9 5,519,472 - PP_4852 0.67 +0.8 5,519,472 - PP_4852 0.67 -0.5 5,519,472 - PP_4852 0.67 +1.6 5,519,472 - PP_4852 0.67 +0.4 5,519,472 - PP_4852 0.67 -1.2 5,519,472 - PP_4852 0.67 -1.4 5,519,472 - PP_4852 0.67 -1.7 5,519,480 - PP_4852 0.68 -1.3 5,519,500 + PP_4852 0.71 +6.2 5,519,500 + PP_4852 0.71 +0.4 5,519,501 - PP_4852 0.71 +2.3 5,519,501 - PP_4852 0.71 -0.5 5,519,501 - PP_4852 0.71 +0.3 5,519,501 - PP_4852 0.71 +0.5 5,519,501 - PP_4852 0.71 +0.3 5,519,501 - PP_4852 0.71 -0.1 5,519,603 - PP_4852 0.84 +0.0 5,519,603 - PP_4852 0.84 +1.6 5,519,675 - +1.0 5,519,717 - +0.0 5,519,717 - -0.2 5,519,717 - +1.8 5,519,717 - +0.9 5,519,721 - +1.2 5,519,762 - -0.1 5,519,767 + -0.0 5,519,768 - +1.0 5,519,768 - +0.5 5,519,769 + +0.6 5,519,792 + +0.5 5,519,792 + +0.9 5,519,796 - -1.5 5,519,877 + +2.1 5,519,877 + -2.8
Or see this region's nucleotide sequence