Strain Fitness in Pseudomonas putida KT2440 around PP_3700

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,220,471	+		PP_3699	0.61	-0.9
4,220,471	+		PP_3699	0.61	+2.3
4,220,472	-				+1.3
4,220,515	+		PP_3699	0.63	-0.5
4,220,515	+		PP_3699	0.63	+0.4
4,220,516	-		PP_3699	0.63	+1.2
4,220,516	-		PP_3699	0.63	-0.5
4,220,516	-		PP_3699	0.63	+1.0
4,220,531	+		PP_3699	0.64	-0.6
4,220,531	+		PP_3699	0.64	-1.9
4,220,532	-		PP_3699	0.64	+3.2
4,220,532	-		PP_3699	0.64	-1.4
4,220,532	-		PP_3699	0.64	-0.9
4,220,554	+		PP_3699	0.66	-2.0
4,220,554	+		PP_3699	0.66	-0.6
4,220,555	-		PP_3699	0.66	-0.8
4,220,576	+		PP_3699	0.67	-0.2
4,220,577	-		PP_3699	0.67	-0.8
4,220,626	+		PP_3699	0.70	+1.3
4,220,626	+		PP_3699	0.70	-2.7
4,220,626	+		PP_3699	0.70	+3.1
4,220,627	-		PP_3699	0.70	-0.3
4,220,627	-		PP_3699	0.70	+0.8
4,220,627	-		PP_3699	0.70	+0.1
4,220,627	-		PP_3699	0.70	+1.1
4,220,660	-		PP_3699	0.72	+0.0
4,220,670	-		PP_3699	0.72	-1.4
4,220,670	-		PP_3699	0.72	-0.8
4,220,707	-		PP_3699	0.75	+1.9
4,220,728	+		PP_3699	0.76	+0.4
4,220,728	+		PP_3699	0.76	+1.3
4,220,792	+		PP_3699	0.79	-1.0
4,220,801	+		PP_3699	0.80	-0.8
4,220,801	+		PP_3699	0.80	-0.6
4,220,904	+		PP_3699	0.86	+0.0
4,220,905	-		PP_3699	0.86	-0.7
4,220,951	+		PP_3699	0.89	+0.5
4,220,951	+		PP_3699	0.89	-0.6
4,220,951	+		PP_3699	0.89	-3.5
4,220,952	-		PP_3699	0.89	+1.1
4,220,952	-		PP_3699	0.89	+0.0
4,220,952	-		PP_3699	0.89	-0.7
4,221,038	+				+1.7
4,221,038	+				-1.6
4,221,038	+				-0.0
4,221,039	-				+0.8
4,221,039	-				-1.5
4,221,108	+				-0.0
4,221,167	+				-0.8
4,221,167	+				-0.5
4,221,230	+				-1.2
4,221,230	+				-0.9
4,221,231	-				-0.8
4,221,231	-				-0.3
4,221,231	-				+1.2
4,221,231	-				-0.1
4,221,234	+				-1.2
4,221,234	+				-0.6
4,221,235	-				+1.2
4,221,235	-				+1.3
4,221,294	+				+1.4
4,221,294	+				+1.7
4,221,294	+				-0.3
4,221,294	+				-0.7
4,221,294	+				+0.5
4,221,295	-				+1.8
4,221,295	-				+0.5
4,221,295	-				+0.8
4,221,306	-				-2.4
4,221,306	-				+0.7
4,221,351	-				-0.9
4,221,376	-				-0.8
4,221,382	-				+0.0
4,221,384	+				+0.2
4,221,385	-				-0.4
4,221,385	-				-1.2
4,221,404	+				-0.2
4,221,405	-				+1.3
4,221,407	-				+0.6
4,221,442	+				-0.0
4,221,442	+				+0.1
4,221,442	+				-0.0
4,221,443	-				+1.2
4,221,443	-				-1.0
4,221,494	+				+0.3
4,221,575	-		PP_3700	0.16	-0.6
4,221,575	-		PP_3700	0.16	+1.0
4,221,612	+		PP_3700	0.19	-2.5
4,221,612	+		PP_3700	0.19	-0.4
4,221,613	-		PP_3700	0.19	+1.6
4,221,678	+		PP_3700	0.25	+0.8
4,221,696	-		PP_3700	0.26	-0.4
4,221,696	-		PP_3700	0.26	-0.9
4,221,732	+		PP_3700	0.30	+0.5
4,221,733	-		PP_3700	0.30	+0.2
4,221,814	-				-0.0
4,221,847	-				+0.3
4,221,867	-		PP_3700	0.42	+0.3
4,221,870	+		PP_3700	0.42	-1.4
4,221,870	+		PP_3700	0.42	-2.8
4,221,870	+		PP_3700	0.42	+2.0
4,221,904	+		PP_3700	0.45	-1.1
4,221,907	+		PP_3700	0.46	+1.4
4,221,908	-		PP_3700	0.46	+1.0
4,221,909	+		PP_3700	0.46	+1.4
4,221,909	+		PP_3700	0.46	-1.9
4,221,909	+		PP_3700	0.46	-0.3
4,221,912	-		PP_3700	0.46	+0.2
4,221,918	-				-0.3
4,222,046	-				+1.7
4,222,053	+		PP_3700	0.59	+3.9
4,222,169	+		PP_3700	0.69	-0.7
4,222,169	+				+0.3
4,222,169	+		PP_3700	0.69	-0.2
4,222,170	-		PP_3700	0.69	+0.3
4,222,200	+		PP_3700	0.72	-2.8
4,222,228	+		PP_3700	0.75	-0.3
4,222,228	+		PP_3700	0.75	-0.6
4,222,228	+		PP_3700	0.75	+1.0
4,222,228	+		PP_3700	0.75	-2.2
4,222,228	+		PP_3700	0.75	-0.8
4,222,229	-		PP_3700	0.75	+1.6
4,222,229	-		PP_3700	0.75	-0.9
4,222,252	-		PP_3700	0.77	-1.3
4,222,282	+		PP_3700	0.79	-0.6
4,222,282	+		PP_3700	0.79	-0.8
4,222,282	+		PP_3700	0.79	+2.4
4,222,283	-		PP_3700	0.79	-1.2
4,222,283	-		PP_3700	0.79	+1.6
4,222,283	-		PP_3700	0.79	-0.8
4,222,283	-		PP_3700	0.79	-1.0
4,222,403	+				-0.9
4,222,449	+				+0.7
4,222,449	+				+0.1
4,222,449	+				-2.0
4,222,449	+				-0.2
4,222,450	-				-1.1
4,222,450	-				+1.3
4,222,450	-				-0.0
4,222,450	-				-0.2
4,222,451	+				+0.7
4,222,451	+				+2.3
4,222,452	-				-1.0
4,222,452	-				+0.2
4,222,510	+				-0.4
4,222,511	-				+0.0
4,222,511	-				-0.1
4,222,530	+				-0.5
4,222,637	+				-0.0
4,222,637	+				-0.2
4,222,637	+				+0.1
4,222,637	+				-0.1
4,222,638	-				+0.4
4,222,696	+		PP_3701	0.22	+0.5
4,222,696	+		PP_3701	0.22	+0.5
4,222,696	+		PP_3701	0.22	+0.3
4,222,697	-		PP_3701	0.23	-0.1
4,222,697	-		PP_3701	0.23	-1.0
4,222,697	-		PP_3701	0.23	-2.2
4,222,697	-		PP_3701	0.23	+0.6
4,222,697	-		PP_3701	0.23	-0.7
4,222,698	+		PP_3701	0.23	+0.1
4,222,698	+		PP_3701	0.23	-0.8
4,222,699	-		PP_3701	0.24	-0.1
4,222,699	-		PP_3701	0.24	-0.9
4,222,720	+				+2.7
4,222,720	+		PP_3701	0.34	+0.2
4,222,720	+		PP_3701	0.34	-0.8
4,222,862	-				+0.3
4,222,870	+				-0.3
4,222,870	+				-0.5
4,222,871	-				-1.4
4,222,969	+		PP_3702	0.60	+0.9
4,222,995	+				+3.3
4,222,995	+		PP_3702	0.75	+0.0
4,222,995	+		PP_3702	0.75	-0.3
4,222,995	+		PP_3702	0.75	+1.1
4,222,995	+		PP_3702	0.75	-0.2
4,222,996	-		PP_3702	0.76	-0.7
4,222,996	-		PP_3702	0.76	+0.5
4,222,996	-		PP_3702	0.76	+0.2
4,222,996	-		PP_3702	0.76	-0.8
4,223,080	-				-0.3
4,223,095	+				+1.0
4,223,108	+				-0.3
4,223,108	+				-0.4
4,223,108	+				+0.0
4,223,108	+				-2.1
4,223,109	-				+0.2
4,223,109	-				+0.1
4,223,109	-				-0.9
4,223,109	-				+3.5
4,223,140	-				+2.6
4,223,140	-				+0.2
4,223,140	-				+1.5
4,223,140	-				-1.6
4,223,140	-				-0.6
4,223,173	+				-0.9
4,223,174	-		PP_3703	0.10	-1.4
4,223,381	+		PP_3703	0.36	+1.0
4,223,382	-		PP_3703	0.36	-1.0
4,223,431	+		PP_3703	0.42	-0.1
4,223,432	-		PP_3703	0.43	+0.2
4,223,432	-		PP_3703	0.43	+1.3
4,223,432	-		PP_3703	0.43	-1.0
4,223,432	-		PP_3703	0.43	+0.4
4,223,441	+		PP_3703	0.44	-0.0
4,223,478	+		PP_3703	0.48	+0.4
4,223,479	-		PP_3703	0.48	+0.1
4,223,479	-		PP_3703	0.48	-1.2