Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3698 and PP_3699 are separated by 138 nucleotides PP_3699 and PP_3700 are separated by 261 nucleotides
PP_3698: PP_3698 - conserved protein of unknown function, at 4,217,797 to 4,219,296
_3698
PP_3699: PP_3699 - conserved protein of unknown function, at 4,219,435 to 4,221,141
_3699
PP_3700: PP_3700 - putative ATPases involved in chromosome partitioning, at 4,221,403 to 4,222,509
_3700
Position (kb) 4219
4220
4221
4222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4218.449 kb on + strand, within PP_3698 at 4218.449 kb on + strand, within PP_3698 at 4218.450 kb on - strand, within PP_3698 at 4218.512 kb on - strand, within PP_3698 at 4218.523 kb on + strand, within PP_3698 at 4218.523 kb on + strand at 4218.523 kb on + strand, within PP_3698 at 4218.524 kb on - strand, within PP_3698 at 4218.645 kb on + strand, within PP_3698 at 4218.675 kb on + strand, within PP_3698 at 4218.731 kb on + strand, within PP_3698 at 4218.731 kb on + strand, within PP_3698 at 4218.732 kb on - strand, within PP_3698 at 4218.732 kb on - strand, within PP_3698 at 4218.732 kb on - strand, within PP_3698 at 4218.778 kb on + strand, within PP_3698 at 4218.779 kb on - strand, within PP_3698 at 4218.779 kb on - strand, within PP_3698 at 4218.779 kb on - strand, within PP_3698 at 4218.779 kb on - strand, within PP_3698 at 4218.993 kb on - strand, within PP_3698 at 4218.993 kb on - strand, within PP_3698 at 4219.042 kb on + strand, within PP_3698 at 4219.042 kb on + strand, within PP_3698 at 4219.042 kb on + strand, within PP_3698 at 4219.042 kb on + strand, within PP_3698 at 4219.063 kb on + strand, within PP_3698 at 4219.064 kb on - strand, within PP_3698 at 4219.136 kb on - strand, within PP_3698 at 4219.136 kb on - strand, within PP_3698 at 4219.211 kb on + strand at 4219.211 kb on + strand at 4219.212 kb on - strand at 4219.212 kb on - strand at 4219.212 kb on - strand at 4219.212 kb on - strand at 4219.228 kb on + strand at 4219.257 kb on + strand at 4219.257 kb on + strand at 4219.257 kb on + strand at 4219.257 kb on + strand at 4219.258 kb on - strand at 4219.258 kb on - strand at 4219.258 kb on - strand at 4219.258 kb on - strand at 4219.262 kb on + strand at 4219.262 kb on + strand at 4219.263 kb on - strand at 4219.263 kb on - strand at 4219.263 kb on - strand at 4219.263 kb on - strand at 4219.280 kb on - strand at 4219.304 kb on + strand at 4219.305 kb on - strand at 4219.311 kb on + strand at 4219.350 kb on + strand at 4219.351 kb on - strand at 4219.351 kb on - strand at 4219.385 kb on + strand at 4219.420 kb on + strand at 4219.421 kb on - strand at 4219.421 kb on - strand at 4219.424 kb on + strand at 4219.424 kb on + strand at 4219.424 kb on + strand at 4219.424 kb on + strand at 4219.425 kb on - strand at 4219.425 kb on - strand at 4219.425 kb on - strand at 4219.440 kb on + strand at 4219.440 kb on + strand at 4219.441 kb on - strand at 4219.441 kb on - strand at 4219.441 kb on - strand at 4219.506 kb on + strand at 4219.506 kb on + strand at 4219.506 kb on + strand at 4219.506 kb on + strand at 4219.507 kb on - strand at 4219.507 kb on - strand at 4219.507 kb on - strand at 4219.507 kb on - strand at 4219.558 kb on - strand at 4219.558 kb on - strand at 4219.622 kb on - strand, within PP_3699 at 4219.645 kb on - strand, within PP_3699 at 4219.689 kb on - strand, within PP_3699 at 4219.808 kb on - strand, within PP_3699 at 4219.853 kb on - strand, within PP_3699 at 4219.878 kb on + strand, within PP_3699 at 4219.879 kb on - strand, within PP_3699 at 4219.896 kb on - strand, within PP_3699 at 4219.905 kb on + strand, within PP_3699 at 4219.961 kb on + strand, within PP_3699 at 4219.962 kb on - strand, within PP_3699 at 4219.962 kb on - strand, within PP_3699 at 4219.962 kb on - strand, within PP_3699 at 4220.254 kb on + strand, within PP_3699 at 4220.254 kb on + strand, within PP_3699 at 4220.254 kb on + strand, within PP_3699 at 4220.266 kb on - strand, within PP_3699 at 4220.269 kb on + strand, within PP_3699 at 4220.315 kb on - strand, within PP_3699 at 4220.336 kb on - strand, within PP_3699 at 4220.359 kb on - strand, within PP_3699 at 4220.399 kb on + strand, within PP_3699 at 4220.399 kb on + strand, within PP_3699 at 4220.400 kb on - strand, within PP_3699 at 4220.471 kb on + strand, within PP_3699 at 4220.471 kb on + strand, within PP_3699 at 4220.472 kb on - strand at 4220.515 kb on + strand, within PP_3699 at 4220.515 kb on + strand, within PP_3699 at 4220.516 kb on - strand, within PP_3699 at 4220.516 kb on - strand, within PP_3699 at 4220.516 kb on - strand, within PP_3699 at 4220.531 kb on + strand, within PP_3699 at 4220.531 kb on + strand, within PP_3699 at 4220.532 kb on - strand, within PP_3699 at 4220.532 kb on - strand, within PP_3699 at 4220.532 kb on - strand, within PP_3699 at 4220.554 kb on + strand, within PP_3699 at 4220.554 kb on + strand, within PP_3699 at 4220.555 kb on - strand, within PP_3699 at 4220.576 kb on + strand, within PP_3699 at 4220.577 kb on - strand, within PP_3699 at 4220.626 kb on + strand, within PP_3699 at 4220.626 kb on + strand, within PP_3699 at 4220.626 kb on + strand, within PP_3699 at 4220.627 kb on - strand, within PP_3699 at 4220.627 kb on - strand, within PP_3699 at 4220.627 kb on - strand, within PP_3699 at 4220.627 kb on - strand, within PP_3699 at 4220.660 kb on - strand, within PP_3699 at 4220.670 kb on - strand, within PP_3699 at 4220.670 kb on - strand, within PP_3699 at 4220.707 kb on - strand, within PP_3699 at 4220.728 kb on + strand, within PP_3699 at 4220.728 kb on + strand, within PP_3699 at 4220.792 kb on + strand, within PP_3699 at 4220.801 kb on + strand, within PP_3699 at 4220.801 kb on + strand, within PP_3699 at 4220.904 kb on + strand, within PP_3699 at 4220.905 kb on - strand, within PP_3699 at 4220.951 kb on + strand, within PP_3699 at 4220.951 kb on + strand, within PP_3699 at 4220.951 kb on + strand, within PP_3699 at 4220.952 kb on - strand, within PP_3699 at 4220.952 kb on - strand, within PP_3699 at 4220.952 kb on - strand, within PP_3699 at 4221.038 kb on + strand at 4221.038 kb on + strand at 4221.038 kb on + strand at 4221.039 kb on - strand at 4221.039 kb on - strand at 4221.108 kb on + strand at 4221.167 kb on + strand at 4221.167 kb on + strand at 4221.230 kb on + strand at 4221.230 kb on + strand at 4221.231 kb on - strand at 4221.231 kb on - strand at 4221.231 kb on - strand at 4221.231 kb on - strand at 4221.234 kb on + strand at 4221.234 kb on + strand at 4221.235 kb on - strand at 4221.235 kb on - strand at 4221.294 kb on + strand at 4221.294 kb on + strand at 4221.294 kb on + strand at 4221.294 kb on + strand at 4221.294 kb on + strand at 4221.295 kb on - strand at 4221.295 kb on - strand at 4221.295 kb on - strand at 4221.306 kb on - strand at 4221.306 kb on - strand at 4221.351 kb on - strand at 4221.376 kb on - strand at 4221.382 kb on - strand at 4221.384 kb on + strand at 4221.385 kb on - strand at 4221.385 kb on - strand at 4221.404 kb on + strand at 4221.405 kb on - strand at 4221.407 kb on - strand at 4221.442 kb on + strand at 4221.442 kb on + strand at 4221.442 kb on + strand at 4221.443 kb on - strand at 4221.443 kb on - strand at 4221.494 kb on + strand at 4221.575 kb on - strand, within PP_3700 at 4221.575 kb on - strand, within PP_3700 at 4221.612 kb on + strand, within PP_3700 at 4221.612 kb on + strand, within PP_3700 at 4221.613 kb on - strand, within PP_3700 at 4221.678 kb on + strand, within PP_3700 at 4221.696 kb on - strand, within PP_3700 at 4221.696 kb on - strand, within PP_3700 at 4221.732 kb on + strand, within PP_3700 at 4221.733 kb on - strand, within PP_3700 at 4221.814 kb on - strand at 4221.847 kb on - strand at 4221.867 kb on - strand, within PP_3700 at 4221.870 kb on + strand, within PP_3700 at 4221.870 kb on + strand, within PP_3700 at 4221.870 kb on + strand, within PP_3700 at 4221.904 kb on + strand, within PP_3700 at 4221.907 kb on + strand, within PP_3700 at 4221.908 kb on - strand, within PP_3700 at 4221.909 kb on + strand, within PP_3700 at 4221.909 kb on + strand, within PP_3700 at 4221.909 kb on + strand, within PP_3700 at 4221.912 kb on - strand, within PP_3700 at 4221.918 kb on - strand at 4222.046 kb on - strand at 4222.053 kb on + strand, within PP_3700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,218,449 + PP_3698 0.43 +0.5 4,218,449 + PP_3698 0.43 -0.9 4,218,450 - PP_3698 0.44 +2.0 4,218,512 - PP_3698 0.48 +1.2 4,218,523 + PP_3698 0.48 +1.3 4,218,523 + +3.3 4,218,523 + PP_3698 0.48 +0.1 4,218,524 - PP_3698 0.48 -0.2 4,218,645 + PP_3698 0.57 -1.2 4,218,675 + PP_3698 0.59 +0.6 4,218,731 + PP_3698 0.62 -0.0 4,218,731 + PP_3698 0.62 +0.1 4,218,732 - PP_3698 0.62 -0.9 4,218,732 - PP_3698 0.62 -0.5 4,218,732 - PP_3698 0.62 +0.4 4,218,778 + PP_3698 0.65 -0.8 4,218,779 - PP_3698 0.65 +3.4 4,218,779 - PP_3698 0.65 +3.6 4,218,779 - PP_3698 0.65 -0.0 4,218,779 - PP_3698 0.65 +1.1 4,218,993 - PP_3698 0.80 -0.7 4,218,993 - PP_3698 0.80 +0.5 4,219,042 + PP_3698 0.83 -1.5 4,219,042 + PP_3698 0.83 +1.0 4,219,042 + PP_3698 0.83 -0.0 4,219,042 + PP_3698 0.83 -0.3 4,219,063 + PP_3698 0.84 +0.2 4,219,064 - PP_3698 0.84 -1.2 4,219,136 - PP_3698 0.89 +1.1 4,219,136 - PP_3698 0.89 +1.0 4,219,211 + +0.0 4,219,211 + +2.2 4,219,212 - -0.0 4,219,212 - +0.3 4,219,212 - -0.4 4,219,212 - +0.6 4,219,228 + +2.0 4,219,257 + +1.0 4,219,257 + -0.7 4,219,257 + -0.7 4,219,257 + +0.9 4,219,258 - -1.9 4,219,258 - +0.6 4,219,258 - -0.3 4,219,258 - -0.1 4,219,262 + -0.0 4,219,262 + +0.3 4,219,263 - -0.5 4,219,263 - +1.0 4,219,263 - +0.2 4,219,263 - -0.8 4,219,280 - +0.9 4,219,304 + +0.5 4,219,305 - -0.5 4,219,311 + -0.7 4,219,350 + +0.1 4,219,351 - +1.0 4,219,351 - +0.8 4,219,385 + -0.2 4,219,420 + -0.2 4,219,421 - -0.5 4,219,421 - +0.4 4,219,424 + +0.7 4,219,424 + -0.7 4,219,424 + +0.3 4,219,424 + +1.1 4,219,425 - +3.6 4,219,425 - +0.4 4,219,425 - +0.3 4,219,440 + +1.4 4,219,440 + -1.2 4,219,441 - -0.0 4,219,441 - +0.8 4,219,441 - -0.1 4,219,506 + +0.6 4,219,506 + +2.3 4,219,506 + +0.4 4,219,506 + -0.6 4,219,507 - -0.0 4,219,507 - -0.5 4,219,507 - -0.0 4,219,507 - +0.7 4,219,558 - -1.5 4,219,558 - -1.7 4,219,622 - PP_3699 0.11 -0.7 4,219,645 - PP_3699 0.12 -0.6 4,219,689 - PP_3699 0.15 +0.4 4,219,808 - PP_3699 0.22 +1.0 4,219,853 - PP_3699 0.24 -1.1 4,219,878 + PP_3699 0.26 -0.2 4,219,879 - PP_3699 0.26 -2.2 4,219,896 - PP_3699 0.27 -0.4 4,219,905 + PP_3699 0.28 +1.8 4,219,961 + PP_3699 0.31 -1.3 4,219,962 - PP_3699 0.31 +0.3 4,219,962 - PP_3699 0.31 +1.7 4,219,962 - PP_3699 0.31 -0.9 4,220,254 + PP_3699 0.48 -0.7 4,220,254 + PP_3699 0.48 +0.9 4,220,254 + PP_3699 0.48 +0.9 4,220,266 - PP_3699 0.49 +0.7 4,220,269 + PP_3699 0.49 +1.6 4,220,315 - PP_3699 0.52 +0.9 4,220,336 - PP_3699 0.53 +0.3 4,220,359 - PP_3699 0.54 -0.1 4,220,399 + PP_3699 0.56 +1.5 4,220,399 + PP_3699 0.56 -1.6 4,220,400 - PP_3699 0.57 +1.5 4,220,471 + PP_3699 0.61 -0.9 4,220,471 + PP_3699 0.61 +2.3 4,220,472 - +1.3 4,220,515 + PP_3699 0.63 -0.5 4,220,515 + PP_3699 0.63 +0.4 4,220,516 - PP_3699 0.63 +1.2 4,220,516 - PP_3699 0.63 -0.5 4,220,516 - PP_3699 0.63 +1.0 4,220,531 + PP_3699 0.64 -0.6 4,220,531 + PP_3699 0.64 -1.9 4,220,532 - PP_3699 0.64 +3.2 4,220,532 - PP_3699 0.64 -1.4 4,220,532 - PP_3699 0.64 -0.9 4,220,554 + PP_3699 0.66 -2.0 4,220,554 + PP_3699 0.66 -0.6 4,220,555 - PP_3699 0.66 -0.8 4,220,576 + PP_3699 0.67 -0.2 4,220,577 - PP_3699 0.67 -0.8 4,220,626 + PP_3699 0.70 +1.3 4,220,626 + PP_3699 0.70 -2.7 4,220,626 + PP_3699 0.70 +3.1 4,220,627 - PP_3699 0.70 -0.3 4,220,627 - PP_3699 0.70 +0.8 4,220,627 - PP_3699 0.70 +0.1 4,220,627 - PP_3699 0.70 +1.1 4,220,660 - PP_3699 0.72 +0.0 4,220,670 - PP_3699 0.72 -1.4 4,220,670 - PP_3699 0.72 -0.8 4,220,707 - PP_3699 0.75 +1.9 4,220,728 + PP_3699 0.76 +0.4 4,220,728 + PP_3699 0.76 +1.3 4,220,792 + PP_3699 0.79 -1.0 4,220,801 + PP_3699 0.80 -0.8 4,220,801 + PP_3699 0.80 -0.6 4,220,904 + PP_3699 0.86 +0.0 4,220,905 - PP_3699 0.86 -0.7 4,220,951 + PP_3699 0.89 +0.5 4,220,951 + PP_3699 0.89 -0.6 4,220,951 + PP_3699 0.89 -3.5 4,220,952 - PP_3699 0.89 +1.1 4,220,952 - PP_3699 0.89 +0.0 4,220,952 - PP_3699 0.89 -0.7 4,221,038 + +1.7 4,221,038 + -1.6 4,221,038 + -0.0 4,221,039 - +0.8 4,221,039 - -1.5 4,221,108 + -0.0 4,221,167 + -0.8 4,221,167 + -0.5 4,221,230 + -1.2 4,221,230 + -0.9 4,221,231 - -0.8 4,221,231 - -0.3 4,221,231 - +1.2 4,221,231 - -0.1 4,221,234 + -1.2 4,221,234 + -0.6 4,221,235 - +1.2 4,221,235 - +1.3 4,221,294 + +1.4 4,221,294 + +1.7 4,221,294 + -0.3 4,221,294 + -0.7 4,221,294 + +0.5 4,221,295 - +1.8 4,221,295 - +0.5 4,221,295 - +0.8 4,221,306 - -2.4 4,221,306 - +0.7 4,221,351 - -0.9 4,221,376 - -0.8 4,221,382 - +0.0 4,221,384 + +0.2 4,221,385 - -0.4 4,221,385 - -1.2 4,221,404 + -0.2 4,221,405 - +1.3 4,221,407 - +0.6 4,221,442 + -0.0 4,221,442 + +0.1 4,221,442 + -0.0 4,221,443 - +1.2 4,221,443 - -1.0 4,221,494 + +0.3 4,221,575 - PP_3700 0.16 -0.6 4,221,575 - PP_3700 0.16 +1.0 4,221,612 + PP_3700 0.19 -2.5 4,221,612 + PP_3700 0.19 -0.4 4,221,613 - PP_3700 0.19 +1.6 4,221,678 + PP_3700 0.25 +0.8 4,221,696 - PP_3700 0.26 -0.4 4,221,696 - PP_3700 0.26 -0.9 4,221,732 + PP_3700 0.30 +0.5 4,221,733 - PP_3700 0.30 +0.2 4,221,814 - -0.0 4,221,847 - +0.3 4,221,867 - PP_3700 0.42 +0.3 4,221,870 + PP_3700 0.42 -1.4 4,221,870 + PP_3700 0.42 -2.8 4,221,870 + PP_3700 0.42 +2.0 4,221,904 + PP_3700 0.45 -1.1 4,221,907 + PP_3700 0.46 +1.4 4,221,908 - PP_3700 0.46 +1.0 4,221,909 + PP_3700 0.46 +1.4 4,221,909 + PP_3700 0.46 -1.9 4,221,909 + PP_3700 0.46 -0.3 4,221,912 - PP_3700 0.46 +0.2 4,221,918 - -0.3 4,222,046 - +1.7 4,222,053 + PP_3700 0.59 +3.9
Or see this region's nucleotide sequence