Strain Fitness in Pseudomonas putida KT2440 around PP_0228

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0227 and PP_0228 are separated by 308 nucleotidesPP_0228 and PP_0229 are separated by 269 nucleotides PP_0227: PP_0227 - periplasmic cystine-binding protein, at 280,245 to 281,039 _0227 PP_0228: PP_0228 - putative serine acetyltransferase, at 281,348 to 282,280 _0228 PP_0229: PP_0229 - choline/carnitine/betaine transporter, at 282,550 to 284,553 _0229 Position (kb) 281 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.581 kb on + strand, within PP_0227at 280.582 kb on - strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.068 kb on - strandat 281.068 kb on - strandat 281.082 kb on + strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.084 kb on + strandat 281.084 kb on + strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.126 kb on + strandat 281.204 kb on + strandat 281.215 kb on + strandat 281.215 kb on + strandat 281.329 kb on + strandat 281.329 kb on + strandat 281.447 kb on - strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.577 kb on - strand, within PP_0228at 281.587 kb on + strand, within PP_0228at 281.816 kb on + strand, within PP_0228at 281.864 kb on + strand, within PP_0228at 281.865 kb on - strand, within PP_0228at 281.981 kb on - strand, within PP_0228at 282.091 kb on + strand, within PP_0228at 282.092 kb on - strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.138 kb on - strand, within PP_0228at 282.163 kb on + strand, within PP_0228at 282.163 kb on + strand, within PP_0228at 282.164 kb on - strand, within PP_0228at 282.164 kb on - strand, within PP_0228at 282.166 kb on + strand, within PP_0228at 282.167 kb on - strand, within PP_0228at 282.167 kb on - strand, within PP_0228at 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.239 kb on - strandat 282.239 kb on - strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.343 kb on - strandat 282.343 kb on - strandat 282.350 kb on + strandat 282.350 kb on + strandat 282.351 kb on - strandat 282.351 kb on - strandat 282.611 kb on - strandat 282.647 kb on + strandat 282.647 kb on + strandat 282.647 kb on + strandat 282.648 kb on - strandat 282.724 kb on + strandat 282.724 kb on + strandat 282.725 kb on - strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 283.042 kb on + strand, within PP_0229at 283.064 kb on + strand, within PP_0229at 283.064 kb on + strand, within PP_0229at 283.222 kb on + strand, within PP_0229at 283.223 kb on - strand, within PP_0229at 283.223 kb on - strand, within PP_0229

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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280,516 + PP_0227 0.34 +4.4
280,516 + PP_0227 0.34 +0.2
280,516 + PP_0227 0.34 -1.1
280,516 + PP_0227 0.34 -0.3
280,516 + PP_0227 0.34 -0.9
280,516 + PP_0227 0.34 -2.4
280,517 - PP_0227 0.34 +0.2
280,517 - PP_0227 0.34 +0.6
280,517 - PP_0227 0.34 -0.1
280,564 + PP_0227 0.40 +2.4
280,564 + PP_0227 0.40 +1.7
280,565 - PP_0227 0.40 -0.1
280,565 - PP_0227 0.40 -0.3
280,565 - PP_0227 0.40 -0.1
280,581 + PP_0227 0.42 -0.8
280,582 - PP_0227 0.42 -0.5
280,678 + PP_0227 0.54 +1.0
280,678 + PP_0227 0.54 -0.3
280,679 - PP_0227 0.55 -0.3
280,679 - PP_0227 0.55 +0.1
280,679 - PP_0227 0.55 -1.2
280,679 - PP_0227 0.55 +0.5
280,679 - PP_0227 0.55 +0.6
280,679 - PP_0227 0.55 -1.1
280,679 - PP_0227 0.55 -2.0
280,697 - PP_0227 0.57 -0.3
280,697 - PP_0227 0.57 +0.0
280,740 + PP_0227 0.62 -2.2
280,740 + PP_0227 0.62 -0.1
280,740 + PP_0227 0.62 +0.3
280,740 + PP_0227 0.62 -0.4
280,740 + PP_0227 0.62 +0.2
280,741 - PP_0227 0.62 +1.2
280,741 - PP_0227 0.62 +0.2
280,741 - PP_0227 0.62 +1.7
280,741 - PP_0227 0.62 +0.3
280,741 - PP_0227 0.62 +1.1
280,741 - PP_0227 0.62 -0.4
280,741 - PP_0227 0.62 +0.0
280,898 - PP_0227 0.82 +0.2
280,898 - PP_0227 0.82 +0.0
281,063 + -2.6
281,063 + -0.7
281,063 + -0.3
281,063 + -2.8
281,064 - +1.0
281,064 - +3.6
281,064 - -0.0
281,068 - +1.2
281,068 - -1.5
281,082 + +0.3
281,083 - -0.3
281,083 - +0.5
281,083 - +0.3
281,084 + +0.6
281,084 + +0.9
281,085 - +1.6
281,085 - -0.6
281,085 - -2.3
281,085 - +0.1
281,085 - -0.3
281,085 - +1.4
281,085 - -0.5
281,126 + +0.1
281,204 + +1.1
281,215 + -1.4
281,215 + -1.6
281,329 + -0.2
281,329 + -0.5
281,447 - PP_0228 0.11 -0.4
281,576 + PP_0228 0.24 -0.2
281,576 + PP_0228 0.24 -0.6
281,576 + PP_0228 0.24 -0.9
281,576 + PP_0228 0.24 -0.7
281,577 - PP_0228 0.25 -1.0
281,587 + PP_0228 0.26 -0.3
281,816 + PP_0228 0.50 +0.1
281,864 + PP_0228 0.55 -0.8
281,865 - PP_0228 0.55 -1.0
281,981 - PP_0228 0.68 +0.7
282,091 + PP_0228 0.80 -0.6
282,092 - PP_0228 0.80 -2.0
282,137 + PP_0228 0.85 -0.7
282,137 + PP_0228 0.85 +0.7
282,137 + PP_0228 0.85 +1.0
282,138 - PP_0228 0.85 +0.3
282,163 + PP_0228 0.87 +2.0
282,163 + PP_0228 0.87 -2.5
282,164 - PP_0228 0.87 +1.0
282,164 - PP_0228 0.87 -0.2
282,166 + PP_0228 0.88 -0.8
282,167 - PP_0228 0.88 -0.4
282,167 - PP_0228 0.88 -0.5
282,238 + +0.2
282,238 + -0.9
282,238 + -0.4
282,238 + -0.6
282,238 + -0.6
282,239 - +1.4
282,239 - +1.8
282,342 + -0.8
282,342 + -0.1
282,342 + +0.3
282,342 + +1.1
282,343 - +0.3
282,343 - +0.2
282,350 + -0.3
282,350 + -0.5
282,351 - -1.6
282,351 - -1.1
282,611 - +0.1
282,647 + -1.0
282,647 + -1.6
282,647 + -0.3
282,648 - +1.3
282,724 + +0.3
282,724 + +4.7
282,725 - +0.5
282,727 + -0.7
282,727 + +0.1
282,727 + +1.7
282,727 + +1.3
282,727 + -0.5
282,727 + +1.2
282,728 - +0.3
282,728 - +1.0
282,728 - +0.2
282,728 - -1.2
282,728 - -1.0
282,728 - +1.3
282,728 - -0.1
282,728 - +0.8
282,728 - +1.9
282,728 - -0.5
283,042 + PP_0229 0.25 +1.5
283,064 + PP_0229 0.26 -1.8
283,064 + PP_0229 0.26 -0.3
283,222 + PP_0229 0.34 +1.3
283,223 - PP_0229 0.34 +0.5
283,223 - PP_0229 0.34 +1.7

Or see this region's nucleotide sequence