Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0058 and PP_0059 are separated by 46 nucleotides PP_0059 and PP_0060 are separated by 3 nucleotides
PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272
_0058
PP_0059: PP_0059 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 69,319 to 69,846
_0059
PP_0060: PP_0060 - glycine-tRNA ligase beta subunit, at 69,850 to 71,904
_0060
Position (kb) 69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 68.326 kb on + strand at 68.327 kb on - strand at 68.342 kb on - strand at 68.617 kb on + strand, within PP_0058 at 68.618 kb on - strand, within PP_0058 at 68.634 kb on + strand, within PP_0058 at 68.634 kb on + strand, within PP_0058 at 68.781 kb on + strand, within PP_0058 at 68.859 kb on + strand, within PP_0058 at 68.931 kb on + strand, within PP_0058 at 68.931 kb on + strand, within PP_0058 at 68.932 kb on - strand, within PP_0058 at 68.932 kb on - strand, within PP_0058 at 68.932 kb on - strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.935 kb on + strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.936 kb on - strand, within PP_0058 at 68.964 kb on - strand, within PP_0058 at 68.977 kb on + strand, within PP_0058 at 69.071 kb on - strand, within PP_0058 at 69.071 kb on - strand, within PP_0058 at 69.121 kb on + strand, within PP_0058 at 69.122 kb on - strand, within PP_0058 at 69.139 kb on + strand, within PP_0058 at 69.140 kb on - strand, within PP_0058 at 69.220 kb on + strand at 69.258 kb on - strand at 69.258 kb on - strand at 69.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 68,326 + -1.4 68,327 - -0.5 68,342 - -0.5 68,617 + PP_0058 0.17 -1.9 68,618 - PP_0058 0.17 -0.9 68,634 + PP_0058 0.19 -0.2 68,634 + PP_0058 0.19 -0.9 68,781 + PP_0058 0.37 -1.0 68,859 + PP_0058 0.47 -0.6 68,931 + PP_0058 0.56 +1.4 68,931 + PP_0058 0.56 -0.3 68,932 - PP_0058 0.57 -0.8 68,932 - PP_0058 0.57 +0.1 68,932 - PP_0058 0.57 -0.8 68,935 + PP_0058 0.57 -1.7 68,935 + PP_0058 0.57 -1.3 68,935 + PP_0058 0.57 -3.5 68,935 + PP_0058 0.57 -1.5 68,935 + PP_0058 0.57 -2.3 68,935 + PP_0058 0.57 +0.6 68,935 + PP_0058 0.57 -0.6 68,935 + PP_0058 0.57 -2.0 68,936 - PP_0058 0.57 -1.8 68,936 - PP_0058 0.57 -1.8 68,936 - PP_0058 0.57 +1.2 68,936 - PP_0058 0.57 -0.5 68,936 - PP_0058 0.57 -0.5 68,936 - PP_0058 0.57 -1.4 68,964 - PP_0058 0.61 -0.5 68,977 + PP_0058 0.62 -1.2 69,071 - PP_0058 0.74 -0.6 69,071 - PP_0058 0.74 -1.4 69,121 + PP_0058 0.81 -1.5 69,122 - PP_0058 0.81 +1.2 69,139 + PP_0058 0.83 -1.6 69,140 - PP_0058 0.83 -0.6 69,220 + -0.4 69,258 - -1.4 69,258 - -0.3 69,268 - +1.2
Or see this region's nucleotide sequence