Strain Fitness in Pseudomonas putida KT2440 around PP_1238

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1237 and PP_1238 are separated by 15 nucleotidesPP_1238 and PP_1239 are separated by 0 nucleotidesPP_1239 and PP_1240 are separated by 30 nucleotides PP_1237: PP_1237 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,414,728 to 1,415,615 _1237 PP_1238: PP_1238 - putative Lipoprotein, at 1,415,631 to 1,416,752 _1238 PP_1239: PP_1239 - Metallo-beta-lactamase family protein, at 1,416,753 to 1,417,511 _1239 PP_1240: PP_1240 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,417,542 to 1,418,252 _1240 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -2 -1 0 1at 1414.690 kb on + strandat 1414.725 kb on + strandat 1414.725 kb on + strandat 1414.725 kb on + strandat 1414.742 kb on + strandat 1414.742 kb on + strandat 1415.082 kb on + strand, within PP_1237at 1415.150 kb on + strand, within PP_1237at 1415.582 kb on + strandat 1415.606 kb on - strandat 1415.613 kb on + strandat 1415.623 kb on + strandat 1415.624 kb on - strandat 1415.669 kb on + strandat 1415.669 kb on + strandat 1415.739 kb on + strandat 1415.844 kb on - strand, within PP_1238at 1416.142 kb on + strand, within PP_1238at 1416.142 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.513 kb on + strand, within PP_1238at 1416.514 kb on - strand, within PP_1238at 1416.514 kb on - strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.751 kb on - strandat 1416.751 kb on - strandat 1416.973 kb on + strand, within PP_1239at 1416.973 kb on + strand, within PP_1239at 1416.981 kb on + strand, within PP_1239at 1417.061 kb on + strand, within PP_1239at 1417.061 kb on + strand, within PP_1239at 1417.107 kb on + strand, within PP_1239at 1417.176 kb on + strand, within PP_1239at 1417.176 kb on + strand, within PP_1239

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,414,690 + -0.1
1,414,725 + +0.6
1,414,725 + -1.3
1,414,725 + -0.9
1,414,742 + +1.4
1,414,742 + +0.8
1,415,082 + PP_1237 0.40 -1.8
1,415,150 + PP_1237 0.48 -0.5
1,415,582 + +0.6
1,415,606 - -0.9
1,415,613 + -0.5
1,415,623 + -0.2
1,415,624 - +1.4
1,415,669 + -0.6
1,415,669 + -1.8
1,415,739 + -0.9
1,415,844 - PP_1238 0.19 -0.3
1,416,142 + PP_1238 0.46 -1.8
1,416,142 + PP_1238 0.46 -0.6
1,416,189 + PP_1238 0.50 +1.5
1,416,189 + PP_1238 0.50 +1.1
1,416,189 + PP_1238 0.50 -0.9
1,416,189 + PP_1238 0.50 +0.1
1,416,189 + PP_1238 0.50 +0.2
1,416,189 + PP_1238 0.50 -0.6
1,416,189 + PP_1238 0.50 -0.9
1,416,189 + PP_1238 0.50 -1.1
1,416,513 + PP_1238 0.79 -1.3
1,416,514 - PP_1238 0.79 +1.4
1,416,514 - PP_1238 0.79 -0.9
1,416,516 + PP_1238 0.79 -1.9
1,416,516 + PP_1238 0.79 +0.4
1,416,516 + PP_1238 0.79 +1.4
1,416,516 + PP_1238 0.79 +0.6
1,416,516 + PP_1238 0.79 -0.9
1,416,516 + PP_1238 0.79 +0.0
1,416,516 + PP_1238 0.79 -1.4
1,416,751 - -0.2
1,416,751 - +0.4
1,416,973 + PP_1239 0.29 +0.8
1,416,973 + PP_1239 0.29 +0.6
1,416,981 + PP_1239 0.30 -1.4
1,417,061 + PP_1239 0.41 +1.4
1,417,061 + PP_1239 0.41 -1.5
1,417,107 + PP_1239 0.47 +0.2
1,417,176 + PP_1239 0.56 -0.1
1,417,176 + PP_1239 0.56 -0.4

Or see this region's nucleotide sequence