Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4787 and PP_4788 overlap by 8 nucleotides PP_4788 and PP_4789 are separated by 25 nucleotides PP_4789 and PP_4790 are separated by 8 nucleotides
PP_4787: PP_4787 - putative protein with nucleoside triphosphate hydrolase domain, at 5,449,132 to 5,450,130
_4787
PP_4788: PP_4788 - Endoribonuclease YbeY, at 5,450,123 to 5,450,596
_4788
PP_4789: PP_4789 - heat shock protein, Co2+ and Mg2+ efflux protein, at 5,450,622 to 5,451,461
_4789
PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987
_4790
Position (kb) 5450
5451
5452 Strain fitness (log2 ratio) -2
-1
0
1 at 5449.699 kb on + strand, within PP_4787 at 5449.798 kb on + strand, within PP_4787 at 5449.798 kb on + strand, within PP_4787 at 5450.074 kb on + strand at 5450.561 kb on + strand at 5450.597 kb on + strand at 5450.598 kb on - strand at 5451.120 kb on + strand, within PP_4789 at 5451.121 kb on - strand, within PP_4789 at 5451.213 kb on + strand, within PP_4789 at 5451.213 kb on + strand, within PP_4789 at 5451.213 kb on + strand, within PP_4789 at 5451.213 kb on + strand, within PP_4789 at 5451.214 kb on - strand at 5451.214 kb on - strand, within PP_4789 at 5451.214 kb on - strand at 5451.391 kb on - strand at 5451.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,449,699 + PP_4787 0.57 +1.5 5,449,798 + PP_4787 0.67 +0.1 5,449,798 + PP_4787 0.67 -0.3 5,450,074 + +0.4 5,450,561 + +0.0 5,450,597 + -0.4 5,450,598 - -2.5 5,451,120 + PP_4789 0.59 -1.9 5,451,121 - PP_4789 0.59 -0.7 5,451,213 + PP_4789 0.70 -0.4 5,451,213 + PP_4789 0.70 -0.4 5,451,213 + PP_4789 0.70 -1.8 5,451,213 + PP_4789 0.70 -0.8 5,451,214 - -0.5 5,451,214 - PP_4789 0.70 -0.5 5,451,214 - -0.1 5,451,391 - -2.5 5,451,428 - -0.5
Or see this region's nucleotide sequence